Task 130909

Name	06425624_06_1
Workunit	94116
Created	16 Jan 2018, 6:34:17 UTC
Sent	16 Jan 2018, 6:36:23 UTC
Report deadline	16 Jan 2018, 14:36:23 UTC
Received	16 Jan 2018, 13:01:20 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	219
Run time	3 min 33 sec
CPU time	2 min 24 sec
Validate state	Valid
Credit	1.65
Device peak FLOPS	2.24 GFLOPS
Application version	boinc2docker v1.11 (vbox64_mt) x86_64-pc-linux-gnu
Peak working set size	93.40 MB
Peak swap size	3.37 GB
Peak disk usage	489.78 MB
Stderr output

<core_client_version>7.4.23</core_client_version>
<![CDATA[
<stderr_txt>
2018-01-16 07:54:22 (28996): vboxwrapper (7.7.26197): starting
2018-01-16 07:54:22 (28996): Feature: Checkpoint interval offset (336 seconds)
2018-01-16 07:54:22 (28996): Detected: VirtualBox VboxManage Interface (Version: 5.1.8)
2018-01-16 07:54:23 (28996): Detected: Minimum checkpoint interval (600.000000 seconds)
2018-01-16 07:54:23 (28996): Create VM. (boinc_37382b4851ff739c, slot#5)
2018-01-16 07:54:23 (28996): Updating drive controller type and model for desired configuration.
2018-01-16 07:54:30 (28996): Setting Memory Size for VM. (3072MB)
2018-01-16 07:54:31 (28996): Setting CPU Count for VM. (1)
2018-01-16 07:54:31 (28996): Setting Chipset Options for VM.
2018-01-16 07:54:31 (28996): Setting Boot Options for VM.
2018-01-16 07:54:31 (28996): Setting Network Configuration for NAT.
2018-01-16 07:54:31 (28996): Enabling VM Network Access.
2018-01-16 07:54:31 (28996): Disabling USB Support for VM.
2018-01-16 07:54:31 (28996): Disabling COM Port Support for VM.
2018-01-16 07:54:31 (28996): Disabling LPT Port Support for VM.
2018-01-16 07:54:31 (28996): Disabling Audio Support for VM.
2018-01-16 07:54:31 (28996): Disabling Clipboard Support for VM.
2018-01-16 07:54:31 (28996): Disabling Drag and Drop Support for VM.
2018-01-16 07:54:31 (28996): Adding storage controller(s) to VM.
2018-01-16 07:54:31 (28996): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2018-01-16 07:54:32 (28996): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2018-01-16 07:54:32 (28996): Enabling shared directory for VM.
2018-01-16 07:54:32 (28996): Starting VM. (boinc_37382b4851ff739c, slot#5)
2018-01-16 07:54:33 (28996): Successfully started VM. (PID = '29817')
2018-01-16 07:54:33 (28996): Reporting VM Process ID to BOINC.
2018-01-16 07:54:33 (28996): Guest Log: BIOS: VirtualBox 5.1.8
2018-01-16 07:54:33 (28996): VM state change detected. (old = 'poweroff', new = 'running')
2018-01-16 07:54:34 (28996): Preference change detected
2018-01-16 07:54:34 (28996): Setting CPU throttle for VM. (75%)
2018-01-16 07:54:34 (28996): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2018-01-16 07:54:36 (28996): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2018-01-16 07:54:36 (28996): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2018-01-16 07:54:36 (28996): Guest Log: BIOS: Boot from Hard Disk 0 failed
2018-01-16 07:54:36 (28996): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2018-01-16 07:54:36 (28996): Guest Log: BIOS: Booting from CD-ROM...
2018-01-16 07:54:38 (28996): Guest Log: BIOS: KBD: unsupported int 16h function 03
2018-01-16 07:54:38 (28996): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2018-01-16 07:54:56 (28996): Guest Log: net.ipv4.ip_forward = 1
2018-01-16 07:54:56 (28996): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2018-01-16 07:54:56 (28996): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2018-01-16 07:54:56 (28996): Guest Log: sysctl: "cannot stat %s" is an unknown key
2018-01-16 07:54:56 (28996): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2018-01-16 07:54:56 (28996): Guest Log: Segmentation fault
2018-01-16 07:54:57 (28996): Guest Log: automount ...
2018-01-16 07:54:57 (28996): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2018-01-16 07:54:58 (28996): Guest Log: automount over.
2018-01-16 07:54:58 (28996): Guest Log: [1;32mSetting hostname to [1;35mboot2docker[0;39m [1;32mDone.[0;39m
2018-01-16 07:54:58 (28996): Guest Log: Tue Jan 16 07:54:55 UTC 2018 dhcp -------------------------------
2018-01-16 07:54:59 (28996): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2018-01-16 07:54:59 (28996): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2018-01-16 07:55:06 (28996): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1040)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00 (1254)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1255)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1256)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1257)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1258)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1259)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1260)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1261)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1262)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1263)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1264)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1265)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1266)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1267)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1268)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1269)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1270)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1271)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1272)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1273)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1274)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1275)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1276)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1277)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1278)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6 (1280)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6/event5 (1281)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1282)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1283)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1284)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1285)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1286)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1287)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1288)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1289)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1290)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1291)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1292)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1293)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1294)
2018-01-16 07:55:06 (28996): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1295)
2018-01-16 07:55:06 (28996): Guest Log: Tue Jan 16 07:55:01 UTC 2018 dhcp -------------------------------
2018-01-16 07:55:06 (28996): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2018-01-16 07:55:06 (28996): Guest Log: 00:00:00.000776 main     Log opened 2018-01-16T07:55:02.554032000Z
2018-01-16 07:55:06 (28996): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2018-01-16 07:55:06 (28996): Guest Log: 00:00:00.000776 main     Log opened 2018-01-16T07:55:02.554032000Z
2018-01-16 07:55:06 (28996): Guest Log: 00:00:00.211831 main     OS Product: Linux
2018-01-16 07:55:06 (28996): Guest Log: 00:00:00.211937 main     OS Release: 4.1.19-boot2docker
2018-01-16 07:55:06 (28996): Guest Log: 00:00:00.212006 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2018-01-16 07:55:06 (28996): Guest Log: 00:00:00.212066 main     Executable: /sbin/VBoxService
2018-01-16 07:55:06 (28996): Guest Log: 00:00:00.212068 main     Process ID: 710
2018-01-16 07:55:06 (28996): Guest Log: 00:00:00.212070 main     Package type: LINUX_64BITS_GENERIC
2018-01-16 07:55:06 (28996): Guest Log: 00:00:000:00:00.213872 main     5.0.16 r105871 started. Verbose level = 0
2018-01-16 07:55:06 (28996): Guest Log: 0.211831 main     OS Product: Linux
2018-01-16 07:55:06 (28996): Guest Log: 00:00:00.211937 main     OS Release: 4.1.19-boot2docker
2018-01-16 07:55:06 (28996): Guest Log: 00:00:00.212006 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2018-01-16 07:55:06 (28996): Guest Log: 00:00:00.212066 main     Executable: /sbin/VBoxService
2018-01-16 07:55:06 (28996): Guest Log: 00:00:00.246436 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2018-01-16 07:55:06 (28996): Guest Log: 00:00:00.246561 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2018-01-16 07:55:06 (28996): Guest Log: 00:00:00.212068 main     Process ID: 710
2018-01-16 07:55:06 (28996): Guest Log: 00:00:00.212070 main     Package type: LINUX_64BITS_GENERIC
2018-01-16 07:55:06 (28996): Guest Log: 00:00:00.213872 main     5.0.16 r105871 started. Verbose level = 0
2018-01-16 07:55:07 (28996): Guest Log: Mounting BOINC shared/...
2018-01-16 07:55:07 (28996): Guest Log: -------------------
2018-01-16 07:55:07 (28996): Guest Log: Tue Jan 16 12:55:06 UTC 2018
2018-01-16 07:55:11 (28996): Guest Log: 00:00:05.247434 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2018-01-16 07:55:12 (28996): Guest Log: Tue Jan 16 12:55:11 UTC 2018
2018-01-16 07:55:12 (28996): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2018-01-16 07:55:12 (28996): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2018-01-16 07:55:12 (28996): Guest Log:     inet 127.0.0.1/8 scope host lo
2018-01-16 07:55:12 (28996): Guest Log:        valid_lft forever preferred_lft forever
2018-01-16 07:55:12 (28996): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2018-01-16 07:55:12 (28996): Guest Log:     link/ether 5a:66:95:ea:25:3b brd ff:ff:ff:ff:ff:ff
2018-01-16 07:55:12 (28996): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2018-01-16 07:55:12 (28996): Guest Log:     link/ether 08:00:27:2c:bf:51 brd ff:ff:ff:ff:ff:ff
2018-01-16 07:55:12 (28996): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2018-01-16 07:55:12 (28996): Guest Log:        valid_lft forever preferred_lft forever
2018-01-16 07:55:12 (28996): Guest Log: -------------------
2018-01-16 07:55:12 (28996): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2018-01-16 07:55:13 (28996): Guest Log: Waiting for Docker daemon to start...
2018-01-16 07:55:15 (28996): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2018-01-16 07:55:15 (28996): Guest Log: Running boinc_app...
2018-01-16 07:55:15 (28996): Guest Log: Importing Docker image from BOINC...
2018-01-16 07:55:15 (28996): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-01-16 07:55:15 (28996): Guest Log: tmpfs                     2.6G    164.1M      2.5G   6% /
2018-01-16 07:55:15 (28996): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-01-16 07:55:15 (28996): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-01-16 07:55:15 (28996): Guest Log: shared                  916.3G     80.3G    835.9G   9% /root/shared
2018-01-16 07:55:15 (28996): Guest Log: tmpfs                     2.6G    164.1M      2.5G   6% /var/lib/docker/aufs
2018-01-16 07:55:16 (28996): Guest Log: 00:00:10.250231 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2018-01-16 07:55:31 (28996): Guest Log: doing docker load...
2018-01-16 07:55:55 (28996): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-01-16 07:55:55 (28996): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /
2018-01-16 07:55:55 (28996): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-01-16 07:55:55 (28996): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-01-16 07:55:55 (28996): Guest Log: shared                  916.3G     79.7G    836.6G   9% /root/shared
2018-01-16 07:55:55 (28996): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /var/lib/docker/aufs
2018-01-16 07:55:55 (28996): Guest Log:               total        used        free      shared  buff/cache   available
2018-01-16 07:55:55 (28996): Guest Log: Mem:           3007          50        2255         663         701        2255
2018-01-16 07:55:55 (28996): Guest Log: Swap:           703           0         703
2018-01-16 07:55:55 (28996): Guest Log: Building apps directory...
2018-01-16 07:55:58 (28996): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2018-01-16 07:56:05 (28996): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077_links.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2018-01-16 07:56:05 (28996): Guest Log: mv /root/shared/appsSource/rappture /root/shared/apps/share64/debian7/environ.d
2018-01-16 07:57:41 (28996): Guest Log: Prerun diagnostics...
2018-01-16 07:57:41 (28996): Guest Log: REPOSITORY                    TAG                 IMAGE ID            CREATED             SIZE
2018-01-16 07:57:41 (28996): Guest Log: nanohub_apps_share64_matlab   4                   32c863520615        5 weeks ago         488.2 MB
2018-01-16 07:57:41 (28996): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2018-01-16 07:57:41 (28996): Guest Log: 499.0M	/var/lib/docker
2018-01-16 07:57:41 (28996): Guest Log:               total        used        free      shared  buff/cache   available
2018-01-16 07:57:41 (28996): Guest Log: Mem:           3007          53        2240         663         713        2250
2018-01-16 07:57:41 (28996): Guest Log: Swap:           703           0         703
2018-01-16 07:57:41 (28996): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-01-16 07:57:41 (28996): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /
2018-01-16 07:57:41 (28996): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-01-16 07:57:41 (28996): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-01-16 07:57:41 (28996): Guest Log: shared                  916.3G     80.3G    836.0G   9% /root/shared
2018-01-16 07:57:41 (28996): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /var/lib/docker/aufs
2018-01-16 07:57:42 (28996): Guest Log: 06425624_06.boinc
2018-01-16 07:57:42 (28996): Guest Log: 06425624_06.sh
2018-01-16 07:57:59 (28996): Guest Log: boinc_app exited (0)
2018-01-16 07:57:59 (28996): Guest Log: Saving results...
2018-01-16 07:57:59 (28996): Guest Log: 06425624_06_output.tar.gz
2018-01-16 07:57:59 (28996): VM Completion File Detected.
2018-01-16 07:57:59 (28996): Powering off VM.
2018-01-16 07:58:00 (28996): Successfully stopped VM.
2018-01-16 07:58:00 (28996): Deregistering VM. (boinc_37382b4851ff739c, slot#5)
2018-01-16 07:58:00 (28996): Removing network bandwidth throttle group from VM.
2018-01-16 07:58:00 (28996): Removing storage controller(s) from VM.
2018-01-16 07:58:00 (28996): Removing VM from VirtualBox.
2018-01-16 07:58:00 (28996): Removing virtual ISO 9660 disk from VirtualBox.
07:58:05 (28996): called boinc_finish(0)

</stderr_txt>
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