Task 133410

Name 06426438_029_1
Workunit 95178
Created 16 Jan 2018, 22:26:36 UTC
Sent 16 Jan 2018, 22:29:27 UTC
Report deadline 17 Jan 2018, 6:29:27 UTC
Received 16 Jan 2018, 23:19:46 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 216
Run time 13 min 2 sec
CPU time 5 min 11 sec
Validate state Valid
Credit 3.34
Device peak FLOPS 2.24 GFLOPS
Application version boinc2docker v1.11 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 93.70 MB
Peak swap size 3.41 GB
Peak disk usage 3.45 GB

Stderr output

<core_client_version>7.4.23</core_client_version>
<![CDATA[
<stderr_txt>
2018-01-16 18:02:48 (25528): vboxwrapper (7.7.26197): starting
2018-01-16 18:02:48 (25528): Feature: Checkpoint interval offset (418 seconds)
2018-01-16 18:02:48 (25528): Detected: VirtualBox VboxManage Interface (Version: 5.1.8)
2018-01-16 18:02:49 (25528): Detected: Minimum checkpoint interval (600.000000 seconds)
2018-01-16 18:02:49 (25528): Create VM. (boinc_6ce19eadb98720da, slot#2)
2018-01-16 18:02:49 (25528): Updating drive controller type and model for desired configuration.
2018-01-16 18:03:00 (25528): Setting Memory Size for VM. (3072MB)
2018-01-16 18:03:00 (25528): Setting CPU Count for VM. (1)
2018-01-16 18:03:00 (25528): Setting Chipset Options for VM.
2018-01-16 18:03:00 (25528): Setting Boot Options for VM.
2018-01-16 18:03:00 (25528): Setting Network Configuration for NAT.
2018-01-16 18:03:00 (25528): Enabling VM Network Access.
2018-01-16 18:03:00 (25528): Disabling USB Support for VM.
2018-01-16 18:03:00 (25528): Disabling COM Port Support for VM.
2018-01-16 18:03:01 (25528): Disabling LPT Port Support for VM.
2018-01-16 18:03:01 (25528): Disabling Audio Support for VM.
2018-01-16 18:03:01 (25528): Disabling Clipboard Support for VM.
2018-01-16 18:03:01 (25528): Disabling Drag and Drop Support for VM.
2018-01-16 18:03:01 (25528): Adding storage controller(s) to VM.
2018-01-16 18:03:01 (25528): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2018-01-16 18:03:01 (25528): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2018-01-16 18:03:01 (25528): Enabling shared directory for VM.
2018-01-16 18:03:02 (25528): Starting VM. (boinc_6ce19eadb98720da, slot#2)
2018-01-16 18:03:03 (25528): Successfully started VM. (PID = '26745')
2018-01-16 18:03:03 (25528): Reporting VM Process ID to BOINC.
2018-01-16 18:03:03 (25528): Guest Log: BIOS: VirtualBox 5.1.8
2018-01-16 18:03:04 (25528): VM state change detected. (old = 'poweroff', new = 'running')
2018-01-16 18:03:04 (25528): Preference change detected
2018-01-16 18:03:04 (25528): Setting CPU throttle for VM. (75%)
2018-01-16 18:03:05 (25528): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2018-01-16 18:03:05 (25528): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2018-01-16 18:03:05 (25528): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2018-01-16 18:03:05 (25528): Guest Log: BIOS: Boot from Hard Disk 0 failed
2018-01-16 18:03:05 (25528): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2018-01-16 18:03:06 (25528): Guest Log: BIOS: Booting from CD-ROM...
2018-01-16 18:03:08 (25528): Guest Log: BIOS: KBD: unsupported int 16h function 03
2018-01-16 18:03:08 (25528): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2018-01-16 18:03:26 (25528): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2018-01-16 18:03:26 (25528): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2018-01-16 18:03:29 (25528): Guest Log: net.ipv4.ip_forward = 1
2018-01-16 18:03:29 (25528): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2018-01-16 18:03:29 (25528): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2018-01-16 18:03:29 (25528): Guest Log: sysctl: "cannot stat %s" is an unknown key
2018-01-16 18:03:29 (25528): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2018-01-16 18:03:29 (25528): Guest Log: Segmentation fault
2018-01-16 18:03:30 (25528): Guest Log: automount ...
2018-01-16 18:03:30 (25528): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2018-01-16 18:03:30 (25528): Guest Log: automount over.
2018-01-16 18:03:30 (25528): Guest Log: Setting hostname to boot2docker Done.
2018-01-16 18:03:31 (25528): Guest Log: Tue Jan 16 18:03:27 UTC 2018 dhcp -------------------------------
2018-01-16 18:03:35 (25528): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2018-01-16 18:03:35 (25528): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7 (1298)
2018-01-16 18:03:35 (25528): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7/event6 (1299)
2018-01-16 18:03:35 (25528): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1300)
2018-01-16 18:03:35 (25528): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1301)
2018-01-16 18:03:35 (25528): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1302)
2018-01-16 18:03:35 (25528): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1303)
2018-01-16 18:03:35 (25528): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1304)
2018-01-16 18:03:35 (25528): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1305)
2018-01-16 18:03:35 (25528): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1306)
2018-01-16 18:03:35 (25528): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1310)
2018-01-16 18:03:35 (25528): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1311)
2018-01-16 18:03:35 (25528): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1312)
2018-01-16 18:03:35 (25528): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1313)
2018-01-16 18:03:35 (25528): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1314)
2018-01-16 18:03:35 (25528): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1316)
2018-01-16 18:03:35 (25528): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1317)
2018-01-16 18:03:35 (25528): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1318)
2018-01-16 18:03:36 (25528): Guest Log: Tue Jan 16 18:03:33 UTC 2018 dhcp -------------------------------
2018-01-16 18:03:37 (25528): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2018-01-16 18:03:37 (25528): Guest Log: 00:00:00.000752 main     Log opened 2018-01-16T18:03:34.582876000Z
2018-01-16 18:03:37 (25528): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2018-01-16 18:03:37 (25528): Guest Log: 00:00:00.000752 main     Log opened 2018-01-16T18:03:34.582876000Z
2018-01-16 18:03:37 (25528): Guest Log: 00:00:00.006396 main     OS Product: Linux
2018-01-16 18:03:37 (25528): Guest Log: 00:00:00.006474 main     OS Release: 4.1.19-boot2docker
2018-01-16 18:03:37 (25528): Guest Log: 00:00:00.006530 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2018-01-16 18:03:37 (25528): Guest Log: 00:00:00.006584 main     Executable: /sbin/VBoxService
2018-01-16 18:03:37 (25528): Guest Log: 00:00:00.006586 main     Process ID: 750
2018-01-16 18:03:37 (25528): Guest Log: 00:00:00.006587 main     Package type: LINUX_64BITS_GENERIC
2018-01-16 18:03:37 (25528): Guest Log: 00:00:00.006396 main     OS Product: Linux
2018-01-16 18:03:37 (25528): Guest Log: 00:00:00.009815 main     5.0.16 r105871 started. Verbose level = 0
2018-01-16 18:03:37 (25528): Guest Log: 00:00:00.006474 main     OS Release: 4.1.19-boot2docker
2018-01-16 18:03:37 (25528): Guest Log: 00:00:00.006530 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2018-01-16 18:03:37 (25528): Guest Log: 00:00:00.006584 main     Executable: /sbin/VBoxService
2018-01-16 18:03:37 (25528): Guest Log: 00:00:00.006586 main     Process ID: 750
2018-01-16 18:03:37 (25528): Guest Log: 00:00:00.006587 main     Package type: LINUX_64BITS_GENERIC
2018-01-16 18:03:37 (25528): Guest Log: 00:00:00.009815 main     5.0.16 r105871 start00:00:00.050158 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2018-01-16 18:03:37 (25528): Guest Log: 00:00:00.050333 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2018-01-16 18:03:37 (25528): Guest Log: ed. Verbose level = 0
2018-01-16 18:03:37 (25528): Guest Log: Mounting BOINC shared/...
2018-01-16 18:03:38 (25528): Guest Log: -------------------
2018-01-16 18:03:38 (25528): Guest Log: Tue Jan 16 23:03:37 UTC 2018
2018-01-16 18:03:42 (25528): Guest Log: 00:00:05.051337 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2018-01-16 18:03:43 (25528): Guest Log: Tue Jan 16 23:03:42 UTC 2018
2018-01-16 18:03:43 (25528): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2018-01-16 18:03:43 (25528): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2018-01-16 18:03:43 (25528): Guest Log:     inet 127.0.0.1/8 scope host lo
2018-01-16 18:03:43 (25528): Guest Log:        valid_lft forever preferred_lft forever
2018-01-16 18:03:43 (25528): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2018-01-16 18:03:43 (25528): Guest Log:     link/ether b2:f5:6e:0e:6c:25 brd ff:ff:ff:ff:ff:ff
2018-01-16 18:03:43 (25528): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2018-01-16 18:03:43 (25528): Guest Log:     link/ether 08:00:27:54:02:51 brd ff:ff:ff:ff:ff:ff
2018-01-16 18:03:43 (25528): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2018-01-16 18:03:43 (25528): Guest Log:        valid_lft forever preferred_lft forever
2018-01-16 18:03:43 (25528): Guest Log: -------------------
2018-01-16 18:03:43 (25528): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2018-01-16 18:03:43 (25528): Guest Log: Waiting for Docker daemon to start...
2018-01-16 18:03:45 (25528): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2018-01-16 18:03:45 (25528): Guest Log: Running boinc_app...
2018-01-16 18:03:45 (25528): Guest Log: Importing Docker image from BOINC...
2018-01-16 18:03:45 (25528): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-01-16 18:03:45 (25528): Guest Log: tmpfs                     2.6G    164.1M      2.5G   6% /
2018-01-16 18:03:45 (25528): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-01-16 18:03:45 (25528): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-01-16 18:03:45 (25528): Guest Log: shared                  140.1G     42.5G     97.6G  30% /root/shared
2018-01-16 18:03:45 (25528): Guest Log: tmpfs                     2.6G    164.1M      2.5G   6% /var/lib/docker/aufs
2018-01-16 18:03:47 (25528): Guest Log: 00:00:10.054261 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2018-01-16 18:04:02 (25528): Guest Log: doing docker load...
2018-01-16 18:04:23 (25528): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-01-16 18:04:23 (25528): Guest Log: tmpfs                     2.6G    631.8M      2.0G  23% /
2018-01-16 18:04:23 (25528): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-01-16 18:04:23 (25528): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-01-16 18:04:23 (25528): Guest Log: shared                  140.1G     42.3G     97.8G  30% /root/shared
2018-01-16 18:04:23 (25528): Guest Log: tmpfs                     2.6G    631.8M      2.0G  23% /var/lib/docker/aufs
2018-01-16 18:04:23 (25528): Guest Log:               total        used        free      shared  buff/cache   available
2018-01-16 18:04:23 (25528): Guest Log: Mem:           3007          50        2288         631         669        2288
2018-01-16 18:04:23 (25528): Guest Log: Swap:           700           0         700
2018-01-16 18:04:23 (25528): Guest Log: Building apps directory...
2018-01-16 18:04:30 (25528): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2018-01-16 18:04:40 (25528): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077_links.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2018-01-16 18:04:40 (25528): Guest Log: mv /root/shared/appsSource/rappture /root/shared/apps/share64/debian7/environ.d
2018-01-16 18:14:56 (25528): Guest Log: Prerun diagnostics...
2018-01-16 18:14:56 (25528): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2018-01-16 18:14:56 (25528): Guest Log: nanohub_apps_base   11                  42db2bf7db3d        6 weeks ago         458.1 MB
2018-01-16 18:14:56 (25528): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2018-01-16 18:14:56 (25528): Guest Log: 467.8M	/var/lib/docker
2018-01-16 18:14:56 (25528): Guest Log:               total        used        free      shared  buff/cache   available
2018-01-16 18:14:56 (25528): Guest Log: Mem:           3007          36        2286         631         683        2298
2018-01-16 18:14:56 (25528): Guest Log: Swap:           700           0         700
2018-01-16 18:14:56 (25528): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-01-16 18:14:56 (25528): Guest Log: tmpfs                     2.6G    631.9M      2.0G  23% /
2018-01-16 18:14:56 (25528): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-01-16 18:14:56 (25528): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-01-16 18:14:56 (25528): Guest Log: shared                  140.1G     42.5G     97.6G  30% /root/shared
2018-01-16 18:14:56 (25528): Guest Log: tmpfs                     2.6G    631.9M      2.0G  23% /var/lib/docker/aufs
2018-01-16 18:14:56 (25528): Guest Log: Running... 
2018-01-16 18:14:57 (25528): Guest Log: 06426438_029.boinc
2018-01-16 18:14:57 (25528): Guest Log: 06426438_029.sh
2018-01-16 18:16:37 (25528): Guest Log: boinc_app exited (0)
2018-01-16 18:16:37 (25528): Guest Log: Saving results...
2018-01-16 18:16:37 (25528): Guest Log: 06426438_029_output.tar.gz
2018-01-16 18:16:37 (25528): VM Completion File Detected.
2018-01-16 18:16:37 (25528): Powering off VM.
2018-01-16 18:16:38 (25528): Successfully stopped VM.
2018-01-16 18:16:38 (25528): Deregistering VM. (boinc_6ce19eadb98720da, slot#2)
2018-01-16 18:16:38 (25528): Removing network bandwidth throttle group from VM.
2018-01-16 18:16:38 (25528): Removing storage controller(s) from VM.
2018-01-16 18:16:38 (25528): Removing VM from VirtualBox.
2018-01-16 18:16:38 (25528): Removing virtual ISO 9660 disk from VirtualBox.
18:16:43 (25528): called boinc_finish(0)

</stderr_txt>
]]>


©2024 COPYRIGHT 2017-2018 NCN