Task 153160

Name 06434948_02_1
Workunit 108462
Created 24 Jan 2018, 15:36:33 UTC
Sent 24 Jan 2018, 15:36:40 UTC
Report deadline 24 Jan 2018, 23:36:40 UTC
Received 24 Jan 2018, 18:40:55 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 215
Run time 6 min 3 sec
CPU time 3 min 48 sec
Validate state Valid
Credit 2.03
Device peak FLOPS 2.24 GFLOPS
Application version boinc2docker v1.11 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 93.37 MB
Peak swap size 3.49 GB
Peak disk usage 1.15 GB

Stderr output

<core_client_version>7.4.23</core_client_version>
<![CDATA[
<stderr_txt>
2018-01-24 13:34:24 (6385): vboxwrapper (7.7.26197): starting
2018-01-24 13:34:24 (6385): Feature: Checkpoint interval offset (142 seconds)
2018-01-24 13:34:24 (6385): Detected: VirtualBox VboxManage Interface (Version: 5.1.8)
2018-01-24 13:34:24 (6385): Detected: Minimum checkpoint interval (600.000000 seconds)
2018-01-24 13:34:24 (6385): Create VM. (boinc_7ee590db0dadae60, slot#4)
2018-01-24 13:34:24 (6385): Updating drive controller type and model for desired configuration.
2018-01-24 13:35:11 (6385): Setting Memory Size for VM. (3072MB)
2018-01-24 13:35:15 (6385): Setting CPU Count for VM. (1)
2018-01-24 13:35:15 (6385): Setting Chipset Options for VM.
2018-01-24 13:35:15 (6385): Setting Boot Options for VM.
2018-01-24 13:35:15 (6385): Setting Network Configuration for NAT.
2018-01-24 13:35:16 (6385): Enabling VM Network Access.
2018-01-24 13:35:16 (6385): Disabling USB Support for VM.
2018-01-24 13:35:16 (6385): Disabling COM Port Support for VM.
2018-01-24 13:35:16 (6385): Disabling LPT Port Support for VM.
2018-01-24 13:35:16 (6385): Disabling Audio Support for VM.
2018-01-24 13:35:17 (6385): Disabling Clipboard Support for VM.
2018-01-24 13:35:17 (6385): Disabling Drag and Drop Support for VM.
2018-01-24 13:35:17 (6385): Adding storage controller(s) to VM.
2018-01-24 13:35:17 (6385): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2018-01-24 13:35:17 (6385): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2018-01-24 13:35:17 (6385): Enabling shared directory for VM.
2018-01-24 13:35:17 (6385): Starting VM. (boinc_7ee590db0dadae60, slot#4)
2018-01-24 13:35:19 (6385): Successfully started VM. (PID = '8968')
2018-01-24 13:35:19 (6385): Reporting VM Process ID to BOINC.
2018-01-24 13:35:19 (6385): Guest Log: BIOS: VirtualBox 5.1.8
2018-01-24 13:35:19 (6385): VM state change detected. (old = 'poweroff', new = 'running')
2018-01-24 13:35:20 (6385): Preference change detected
2018-01-24 13:35:20 (6385): Setting CPU throttle for VM. (75%)
2018-01-24 13:35:21 (6385): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2018-01-24 13:35:22 (6385): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2018-01-24 13:35:22 (6385): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2018-01-24 13:35:22 (6385): Guest Log: BIOS: Boot from Hard Disk 0 failed
2018-01-24 13:35:22 (6385): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2018-01-24 13:35:22 (6385): Guest Log: BIOS: Booting from CD-ROM...
2018-01-24 13:35:25 (6385): Guest Log: BIOS: KBD: unsupported int 16h function 03
2018-01-24 13:35:25 (6385): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2018-01-24 13:35:44 (6385): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2018-01-24 13:35:44 (6385): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2018-01-24 13:35:45 (6385): Guest Log: net.ipv4.ip_forward = 1
2018-01-24 13:35:45 (6385): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2018-01-24 13:35:45 (6385): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2018-01-24 13:35:45 (6385): Guest Log: sysctl: "cannot stat %s" is an unknown key
2018-01-24 13:35:45 (6385): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2018-01-24 13:35:45 (6385): Guest Log: Segmentation fault
2018-01-24 13:35:46 (6385): Guest Log: automount ...
2018-01-24 13:35:46 (6385): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2018-01-24 13:35:46 (6385): Guest Log: automount over.
2018-01-24 13:35:46 (6385): Guest Log: Setting hostname to boot2docker Done.
2018-01-24 13:35:46 (6385): Guest Log: Wed Jan 24 13:35:44 UTC 2018 dhcp -------------------------------
2018-01-24 13:35:51 (6385): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2018-01-24 13:35:51 (6385): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6 (1296)
2018-01-24 13:35:51 (6385): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6/event5 (1297)
2018-01-24 13:35:51 (6385): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1298)
2018-01-24 13:35:51 (6385): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1299)
2018-01-24 13:35:51 (6385): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1300)
2018-01-24 13:35:51 (6385): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1301)
2018-01-24 13:35:51 (6385): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1303)
2018-01-24 13:35:51 (6385): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1305)
2018-01-24 13:35:51 (6385): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1308)
2018-01-24 13:35:51 (6385): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1309)
2018-01-24 13:35:51 (6385): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1310)
2018-01-24 13:35:51 (6385): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1311)
2018-01-24 13:35:51 (6385): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1313)
2018-01-24 13:35:51 (6385): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1314)
2018-01-24 13:35:51 (6385): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1315)
2018-01-24 13:35:51 (6385): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1316)
2018-01-24 13:35:51 (6385): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1319)
2018-01-24 13:35:53 (6385): Guest Log: Wed Jan 24 13:35:50 UTC 2018 dhcp -------------------------------
2018-01-24 13:35:53 (6385): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2018-01-24 13:35:53 (6385): Guest Log: 00:00:00.000693 main     Log opened 2018-01-24T13:35:51.350633000Z
2018-01-24 13:35:53 (6385): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2018-01-24 13:35:53 (6385): Guest Log: 00:00:00.000693 main     Log opened 2018-01-24T13:35:51.350633000Z
2018-01-24 13:35:53 (6385): Guest Log: 00:00:00.006792 main     OS Product: Linux
2018-01-24 13:35:53 (6385): Guest Log: 00:00:00.006858 main     OS Release: 4.1.19-boot2docker
2018-01-24 13:35:53 (6385): Guest Log: 00:00:00.006917 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2018-01-24 13:35:53 (6385): Guest Log: 00:00:00.006977 main     Executable: /sbin/VBoxService
2018-01-24 13:35:53 (6385): Guest Log: 00:00:00.006979 main     Process ID: 721
2018-01-24 13:35:53 (6385): Guest Log: 00:00:00.006980 main     Package type: LINUX_64BITS_GENERIC
2018-01-24 13:35:53 (6385): Guest Log: 00:00:00.006792 m00:00:00.008275 main     5.0.16 r105871 started. Verbose level = 0
2018-01-24 13:35:53 (6385): Guest Log: ain     OS Product: Linux
2018-01-24 13:35:53 (6385): Guest Log: 00:00:00.006858 main     OS Release: 4.1.19-boot2docker
2018-01-24 13:35:53 (6385): Guest Log: 00:00:00.006917 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2018-01-24 13:35:53 (6385): Guest Log: 00:00:00.006977 main     Executable: /sbin/VBoxService
2018-01-24 13:35:53 (6385): Guest Log: 00:00:00.006979 main     Process ID: 721
2018-01-24 13:35:53 (6385): Guest Log: 00:00:00.006980 main     Package type: LI00:00:00.074893 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2018-01-24 13:35:53 (6385): Guest Log: 00:00:00.075085 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2018-01-24 13:35:53 (6385): Guest Log: NUX_64BITS_GENERIC
2018-01-24 13:35:53 (6385): Guest Log: 00:00:00.008275 main     5.0.16 r105871 started. Verbose level = 0
2018-01-24 13:35:53 (6385): Guest Log: Mounting BOINC shared/...
2018-01-24 13:35:53 (6385): Guest Log: -------------------
2018-01-24 13:35:53 (6385): Guest Log: Wed Jan 24 18:35:53 UTC 2018
2018-01-24 13:35:58 (6385): Guest Log: 00:00:05.078980 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2018-01-24 13:35:58 (6385): Guest Log: Wed Jan 24 18:35:58 UTC 2018
2018-01-24 13:35:58 (6385): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2018-01-24 13:35:58 (6385): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2018-01-24 13:35:58 (6385): Guest Log:     inet 127.0.0.1/8 scope host lo
2018-01-24 13:35:58 (6385): Guest Log:        valid_lft forever preferred_lft forever
2018-01-24 13:35:58 (6385): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2018-01-24 13:35:58 (6385): Guest Log:     link/ether 1a:c5:37:e9:d9:38 brd ff:ff:ff:ff:ff:ff
2018-01-24 13:35:58 (6385): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2018-01-24 13:35:58 (6385): Guest Log:     link/ether 08:00:27:a1:14:c9 brd ff:ff:ff:ff:ff:ff
2018-01-24 13:35:58 (6385): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2018-01-24 13:35:58 (6385): Guest Log:        valid_lft forever preferred_lft forever
2018-01-24 13:35:58 (6385): Guest Log: -------------------
2018-01-24 13:35:58 (6385): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2018-01-24 13:35:58 (6385): Guest Log: Waiting for Docker daemon to start...
2018-01-24 13:36:00 (6385): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2018-01-24 13:36:00 (6385): Guest Log: Running boinc_app...
2018-01-24 13:36:00 (6385): Guest Log: Importing Docker image from BOINC...
2018-01-24 13:36:00 (6385): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-01-24 13:36:00 (6385): Guest Log: tmpfs                     2.6G    164.1M      2.5G   6% /
2018-01-24 13:36:00 (6385): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-01-24 13:36:00 (6385): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-01-24 13:36:00 (6385): Guest Log: shared                  886.1G     89.0G    797.1G  10% /root/shared
2018-01-24 13:36:00 (6385): Guest Log: tmpfs                     2.6G    164.1M      2.5G   6% /var/lib/docker/aufs
2018-01-24 13:36:03 (6385): Guest Log: 00:00:10.080382 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2018-01-24 13:36:18 (6385): Guest Log: doing docker load...
2018-01-24 13:36:41 (6385): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-01-24 13:36:41 (6385): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /
2018-01-24 13:36:41 (6385): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-01-24 13:36:41 (6385): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-01-24 13:36:41 (6385): Guest Log: shared                  886.1G     87.9G    798.2G  10% /root/shared
2018-01-24 13:36:41 (6385): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /var/lib/docker/aufs
2018-01-24 13:36:41 (6385): Guest Log:               total        used        free      shared  buff/cache   available
2018-01-24 13:36:41 (6385): Guest Log: Mem:           3007          49        2256         663         701        2257
2018-01-24 13:36:41 (6385): Guest Log: Swap:           703           0         703
2018-01-24 13:36:41 (6385): Guest Log: Building apps directory...
2018-01-24 13:36:46 (6385): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2018-01-24 13:36:53 (6385): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077_links.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2018-01-24 13:36:54 (6385): Guest Log: mv /root/shared/appsSource/rappture /root/shared/apps/share64/debian7/environ.d
2018-01-24 13:38:35 (6385): Guest Log: Prerun diagnostics...
2018-01-24 13:38:35 (6385): Guest Log: REPOSITORY                    TAG                 IMAGE ID            CREATED             SIZE
2018-01-24 13:38:35 (6385): Guest Log: nanohub_apps_share64_matlab   4                   32c863520615        7 weeks ago         488.2 MB
2018-01-24 13:38:35 (6385): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2018-01-24 13:38:36 (6385): Guest Log: 499.0M	/var/lib/docker
2018-01-24 13:38:36 (6385): Guest Log:               total        used        free      shared  buff/cache   available
2018-01-24 13:38:36 (6385): Guest Log: Mem:           3007          51        2242         663         713        2252
2018-01-24 13:38:36 (6385): Guest Log: Swap:           703           0         703
2018-01-24 13:38:36 (6385): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-01-24 13:38:36 (6385): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /
2018-01-24 13:38:36 (6385): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-01-24 13:38:36 (6385): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-01-24 13:38:36 (6385): Guest Log: shared                  886.1G     88.6G    797.5G  10% /root/shared
2018-01-24 13:38:36 (6385): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /var/lib/docker/aufs
2018-01-24 13:38:36 (6385): Guest Log: Running... 
2018-01-24 13:38:36 (6385): Guest Log: 06434948_02.boinc
2018-01-24 13:38:36 (6385): Guest Log: 06434948_02.sh
2018-01-24 13:40:29 (6385): Guest Log: boinc_app exited (0)
2018-01-24 13:40:29 (6385): Guest Log: Saving results...
2018-01-24 13:40:29 (6385): Guest Log: 06434948_02_output.tar.gz
2018-01-24 13:40:30 (6385): VM Completion File Detected.
2018-01-24 13:40:30 (6385): Powering off VM.
2018-01-24 13:40:34 (6385): Successfully stopped VM.
2018-01-24 13:40:34 (6385): Deregistering VM. (boinc_7ee590db0dadae60, slot#4)
2018-01-24 13:40:34 (6385): Removing network bandwidth throttle group from VM.
2018-01-24 13:40:37 (6385): Removing storage controller(s) from VM.
2018-01-24 13:40:37 (6385): Removing VM from VirtualBox.
2018-01-24 13:40:37 (6385): Removing virtual ISO 9660 disk from VirtualBox.
13:40:42 (6385): called boinc_finish(0)

</stderr_txt>
]]>


©2024 COPYRIGHT 2017-2018 NCN