Task 1819019

Name 07186371_378_3
Workunit 1265080
Created 28 Apr 2019, 20:04:31 UTC
Sent 28 Apr 2019, 20:05:36 UTC
Report deadline 3 May 2019, 20:05:36 UTC
Received 29 Apr 2019, 3:58:29 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 498
Run time 6 min 40 sec
CPU time 5 min 37 sec
Validate state Valid
Credit 2.82
Device peak FLOPS 1.96 GFLOPS
Application version boinc2docker v1.12 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 115.03 MB
Peak swap size 3.87 GB
Peak disk usage 1.14 GB

Stderr output

<core_client_version>7.6.31</core_client_version>
<![CDATA[
<stderr_txt>
2019-04-29 03:56:47 (45891): vboxwrapper (7.7.26197): starting
2019-04-29 03:56:47 (45891): Feature: Checkpoint interval offset (228 seconds)
2019-04-29 03:56:47 (45891): Detected: VirtualBox VboxManage Interface (Version: 5.2.26)
2019-04-29 03:56:48 (45891): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-04-29 03:56:49 (45891): Create VM. (boinc_9d5a8565b8c7df07, slot#57)
2019-04-29 03:56:49 (45891): Updating drive controller type and model for desired configuration.
2019-04-29 03:56:50 (45891): Setting Memory Size for VM. (3072MB)
2019-04-29 03:56:50 (45891): Setting CPU Count for VM. (1)
2019-04-29 03:56:51 (45891): Setting Chipset Options for VM.
2019-04-29 03:56:51 (45891): Setting Boot Options for VM.
2019-04-29 03:56:52 (45891): Setting Network Configuration for NAT.
2019-04-29 03:56:52 (45891): Enabling VM Network Access.
2019-04-29 03:56:52 (45891): Disabling USB Support for VM.
2019-04-29 03:56:53 (45891): Disabling COM Port Support for VM.
2019-04-29 03:56:53 (45891): Disabling LPT Port Support for VM.
2019-04-29 03:56:54 (45891): Disabling Audio Support for VM.
2019-04-29 03:56:54 (45891): Disabling Clipboard Support for VM.
2019-04-29 03:56:55 (45891): Disabling Drag and Drop Support for VM.
2019-04-29 03:56:55 (45891): Adding storage controller(s) to VM.
2019-04-29 03:56:55 (45891): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-04-29 03:56:56 (45891): Adding VirtualBox Guest Additions to VM.
2019-04-29 03:56:56 (45891): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-04-29 03:56:56 (45891): Enabling shared directory for VM.
2019-04-29 03:56:57 (45891): Starting VM. (boinc_9d5a8565b8c7df07, slot#57)
2019-04-29 03:56:59 (45891): Successfully started VM. (PID = '46739')
2019-04-29 03:56:59 (45891): Reporting VM Process ID to BOINC.
2019-04-29 03:57:00 (45891): Guest Log: BIOS: VirtualBox 5.2.26
2019-04-29 03:57:00 (45891): Guest Log: CPUID EDX: 0x078bfbff
2019-04-29 03:57:01 (45891): VM state change detected. (old = 'poweroff', new = 'running')
2019-04-29 03:57:01 (45891): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-04-29 03:57:01 (45891): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2019-04-29 03:57:01 (45891): Guest Log: BIOS: Boot from Hard Disk 0 failed
2019-04-29 03:57:01 (45891): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2019-04-29 03:57:01 (45891): Guest Log: BIOS: Booting from CD-ROM...
2019-04-29 03:57:03 (45891): Preference change detected
2019-04-29 03:57:03 (45891): Setting CPU throttle for VM. (100%)
2019-04-29 03:57:06 (45891): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 600 seconds))
2019-04-29 03:57:08 (45891): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-04-29 03:57:08 (45891): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-04-29 03:57:19 (45891): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-04-29 03:57:19 (45891): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-04-29 03:57:23 (45891): Guest Log: net.ipv4.ip_forward = 1
2019-04-29 03:57:23 (45891): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2019-04-29 03:57:23 (45891): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-04-29 03:57:23 (45891): Guest Log: sysctl: "cannot stat %s" is an unknown key
2019-04-29 03:57:23 (45891): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-04-29 03:57:23 (45891): Guest Log: Segmentation fault
2019-04-29 03:57:23 (45891): Guest Log: automount ...
2019-04-29 03:57:23 (45891): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2019-04-29 03:57:23 (45891): Guest Log: automount over.
2019-04-29 03:57:23 (45891): Guest Log: Setting hostname to boot2docker Done.
2019-04-29 03:57:23 (45891): Guest Log: Mon Apr 29 03:57:21 UTC 2019 dhcp -------------------------------
2019-04-29 03:57:28 (45891): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2019-04-29 03:57:28 (45891): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1341)
2019-04-29 03:57:29 (45891): Guest Log: Mon Apr 29 03:57:27 UTC 2019 dhcp -------------------------------
2019-04-29 03:57:29 (45891): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-04-29 03:57:29 (45891): Guest Log: 00:00:00.000201 main     Log opened 2019-04-29T03:57:27.416155000Z
2019-04-29 03:57:29 (45891): Guest Log: 00:00:00.004712 main     OS Product: Linux
2019-04-29 03:57:29 (45891): Guest Log: 00:00:00.004880 main     OS Release: 4.1.19-boot2docker
2019-04-29 03:57:29 (45891): Guest Log: 00:00:00.004950 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-04-29 03:57:29 (45891): Guest Log: 00:00:00.005010 main     Executable: /sbin/VBoxService
2019-04-29 03:57:29 (45891): Guest Log: 00:00:00.005012 main     Process ID: 848
2019-04-29 03:57:29 (45891): Guest Log: 00:00:00.005014 main     Package type: LINUX_64BITS_GENERIC
2019-04-29 03:57:29 (45891): Guest Log: 00:00:00.004712 main     OS Product: Linux
2019-04-29 03:57:29 (45891): Guest Log: 00:00:00.004880 main     OS Release: 4.1.19-boot2docker
2019-04-29 03:57:29 (45891): Guest Log: 00:00:00.004950 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-04-29 03:57:29 (45891): Guest Log: 00:00:00.005010 main     Executable: /sbin/VBoxService
2019-04-29 03:57:29 (45891): Guest Log: 00:00:00.005012 main     Process ID: 848
2019-04-29 03:57:29 (45891): Guest Log: 00:00:00.005014 main     Package type: LINUX_64BITS_GENERIC
2019-04-29 03:57:29 (45891): Guest Log: 00:00:00.018987 main     5.0.16 r105871 started. Verbose level = 0
2019-04-29 03:57:29 (45891): Guest Log: 00:00:00.018987 main     5.0.16 r105871 started. Verbose level = 0
2019-04-29 03:57:29 (45891): Guest Log: 00:00:00.067078 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2019-04-29 03:57:29 (45891): Guest Log: 00:00:00.067200 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2019-04-29 03:57:29 (45891): Guest Log: Mounting BOINC shared/...
2019-04-29 03:57:29 (45891): Guest Log: -------------------
2019-04-29 03:57:29 (45891): Guest Log: Mon Apr 29 01:57:29 UTC 2019
2019-04-29 03:57:35 (45891): Guest Log: 00:00:05.083181 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2019-04-29 03:57:35 (45891): Guest Log: Mon Apr 29 01:57:34 UTC 2019
2019-04-29 03:57:35 (45891): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2019-04-29 03:57:35 (45891): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2019-04-29 03:57:35 (45891): Guest Log:     inet 127.0.0.1/8 scope host lo
2019-04-29 03:57:35 (45891): Guest Log:        valid_lft forever preferred_lft forever
2019-04-29 03:57:35 (45891): Guest Log:     inet6 ::1/128 scope host 
2019-04-29 03:57:35 (45891): Guest Log:        valid_lft forever preferred_lft forever
2019-04-29 03:57:35 (45891): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2019-04-29 03:57:35 (45891): Guest Log:     link/ether b6:1f:98:e7:0b:4a brd ff:ff:ff:ff:ff:ff
2019-04-29 03:57:35 (45891): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2019-04-29 03:57:35 (45891): Guest Log:     link/ether 08:00:27:d5:ee:65 brd ff:ff:ff:ff:ff:ff
2019-04-29 03:57:35 (45891): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2019-04-29 03:57:35 (45891): Guest Log:        valid_lft forever preferred_lft forever
2019-04-29 03:57:35 (45891): Guest Log:     inet6 fe80::a00:27ff:fed5:ee65/64 scope link 
2019-04-29 03:57:35 (45891): Guest Log:        valid_lft forever preferred_lft forever
2019-04-29 03:57:35 (45891): Guest Log: -------------------
2019-04-29 03:57:35 (45891): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2019-04-29 03:57:35 (45891): Guest Log: Waiting for Docker daemon to start...
2019-04-29 03:57:37 (45891): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-04-29 03:57:37 (45891): Guest Log: Running boinc_app...
2019-04-29 03:57:37 (45891): Guest Log: Importing Docker image from BOINC...
2019-04-29 03:57:37 (45891): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-04-29 03:57:37 (45891): Guest Log: tmpfs                     2.6G    164.2M      2.5G   6% /
2019-04-29 03:57:37 (45891): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-04-29 03:57:37 (45891): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2019-04-29 03:57:37 (45891): Guest Log: shared                   91.4G     35.5G     55.9G  39% /root/shared
2019-04-29 03:57:37 (45891): Guest Log: tmpfs                     2.6G    164.2M      2.5G   6% /var/lib/docker/aufs
2019-04-29 03:57:43 (45891): Guest Log: 00:00:10.087408 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2019-04-29 03:57:48 (45891): Guest Log: doing docker load...
2019-04-29 03:58:02 (45891): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-04-29 03:58:02 (45891): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /
2019-04-29 03:58:02 (45891): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-04-29 03:58:02 (45891): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2019-04-29 03:58:02 (45891): Guest Log: shared                   91.4G     36.3G     55.1G  40% /root/shared
2019-04-29 03:58:02 (45891): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /var/lib/docker/aufs
2019-04-29 03:58:02 (45891): Guest Log:               total        used        free      shared  buff/cache   available
2019-04-29 03:58:02 (45891): Guest Log: Mem:           3007          50        2254         663         701        2255
2019-04-29 03:58:02 (45891): Guest Log: Swap:           700           0         700
2019-04-29 03:58:02 (45891): Guest Log: Building apps directory...
2019-04-29 04:02:00 (45891): Guest Log: Prerun diagnostics...
2019-04-29 04:02:00 (45891): Guest Log: REPOSITORY                    TAG                 IMAGE ID            CREATED             SIZE
2019-04-29 04:02:00 (45891): Guest Log: nanohub_apps_share64_matlab   4                   32c863520615        16 months ago       488.2 MB
2019-04-29 04:02:00 (45891): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2019-04-29 04:02:00 (45891): Guest Log: 499.0M	/var/lib/docker
2019-04-29 04:02:00 (45891): Guest Log:               total        used        free      shared  buff/cache   available
2019-04-29 04:02:00 (45891): Guest Log: Mem:           3007          55        2213         663         738        2243
2019-04-29 04:02:00 (45891): Guest Log: Swap:           700           0         700
2019-04-29 04:02:00 (45891): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-04-29 04:02:00 (45891): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /
2019-04-29 04:02:00 (45891): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-04-29 04:02:00 (45891): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2019-04-29 04:02:00 (45891): Guest Log: shared                   91.4G     29.8G     61.6G  33% /root/shared
2019-04-29 04:02:00 (45891): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /var/lib/docker/aufs
2019-04-29 04:02:00 (45891): Guest Log: Running... 
2019-04-29 04:02:00 (45891): Guest Log: 07186371_378.boinc
2019-04-29 04:02:00 (45891): Guest Log: 07186371_378.sh
2019-04-29 04:03:15 (45891): Guest Log: boinc_app exited (0)
2019-04-29 04:03:15 (45891): Guest Log: Saving results...
2019-04-29 04:03:15 (45891): Guest Log: 07186371_378_output.tar.gz
2019-04-29 04:03:15 (45891): VM Completion File Detected.
2019-04-29 04:03:15 (45891): Powering off VM.
2019-04-29 04:03:19 (45891): Successfully stopped VM.
2019-04-29 04:03:19 (45891): Deregistering VM. (boinc_9d5a8565b8c7df07, slot#57)
2019-04-29 04:03:19 (45891): Removing network bandwidth throttle group from VM.
2019-04-29 04:03:19 (45891): Removing storage controller(s) from VM.
2019-04-29 04:03:20 (45891): Removing VM from VirtualBox.
2019-04-29 04:03:20 (45891): Removing virtual ISO 9660 disk from VirtualBox.
04:03:25 (45891): called boinc_finish(0)

</stderr_txt>
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