Task 1819024

Name 07191191_018_3
Workunit 1311503
Created 28 Apr 2019, 20:04:32 UTC
Sent 28 Apr 2019, 20:05:36 UTC
Report deadline 3 May 2019, 20:05:36 UTC
Received 29 Apr 2019, 3:58:29 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 498
Run time 6 min 18 sec
CPU time 5 min 27 sec
Validate state Valid
Credit 2.61
Device peak FLOPS 1.96 GFLOPS
Application version boinc2docker v1.12 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 114.72 MB
Peak swap size 3.93 GB
Peak disk usage 1.17 GB

Stderr output

<core_client_version>7.6.31</core_client_version>
<![CDATA[
<stderr_txt>
2019-04-29 04:03:32 (62425): vboxwrapper (7.7.26197): starting
2019-04-29 04:03:33 (62425): Feature: Checkpoint interval offset (200 seconds)
2019-04-29 04:03:33 (62425): Detected: VirtualBox VboxManage Interface (Version: 5.2.26)
2019-04-29 04:03:33 (62425): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-04-29 04:03:34 (62425): Create VM. (boinc_e65cff6608fa913e, slot#57)
2019-04-29 04:03:34 (62425): Updating drive controller type and model for desired configuration.
2019-04-29 04:03:35 (62425): Setting Memory Size for VM. (3072MB)
2019-04-29 04:03:35 (62425): Setting CPU Count for VM. (1)
2019-04-29 04:03:36 (62425): Setting Chipset Options for VM.
2019-04-29 04:03:36 (62425): Setting Boot Options for VM.
2019-04-29 04:03:36 (62425): Setting Network Configuration for NAT.
2019-04-29 04:03:37 (62425): Enabling VM Network Access.
2019-04-29 04:03:37 (62425): Disabling USB Support for VM.
2019-04-29 04:03:37 (62425): Disabling COM Port Support for VM.
2019-04-29 04:03:38 (62425): Disabling LPT Port Support for VM.
2019-04-29 04:03:38 (62425): Disabling Audio Support for VM.
2019-04-29 04:03:39 (62425): Disabling Clipboard Support for VM.
2019-04-29 04:03:39 (62425): Disabling Drag and Drop Support for VM.
2019-04-29 04:03:39 (62425): Adding storage controller(s) to VM.
2019-04-29 04:03:40 (62425): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-04-29 04:03:40 (62425): Adding VirtualBox Guest Additions to VM.
2019-04-29 04:03:40 (62425): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-04-29 04:03:40 (62425): Enabling shared directory for VM.
2019-04-29 04:03:41 (62425): Starting VM. (boinc_e65cff6608fa913e, slot#57)
2019-04-29 04:03:44 (62425): Successfully started VM. (PID = '63194')
2019-04-29 04:03:44 (62425): Reporting VM Process ID to BOINC.
2019-04-29 04:03:45 (62425): Guest Log: BIOS: VirtualBox 5.2.26
2019-04-29 04:03:45 (62425): Guest Log: CPUID EDX: 0x078bfbff
2019-04-29 04:03:46 (62425): VM state change detected. (old = 'poweroff', new = 'running')
2019-04-29 04:03:46 (62425): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-04-29 04:03:46 (62425): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2019-04-29 04:03:46 (62425): Guest Log: BIOS: Boot from Hard Disk 0 failed
2019-04-29 04:03:46 (62425): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2019-04-29 04:03:46 (62425): Guest Log: BIOS: Booting from CD-ROM...
2019-04-29 04:03:50 (62425): Preference change detected
2019-04-29 04:03:50 (62425): Setting CPU throttle for VM. (100%)
2019-04-29 04:03:52 (62425): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 600 seconds))
2019-04-29 04:03:57 (62425): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-04-29 04:03:57 (62425): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-04-29 04:04:05 (62425): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-04-29 04:04:05 (62425): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-04-29 04:04:05 (62425): Guest Log: net.ipv4.ip_forward = 1
2019-04-29 04:04:05 (62425): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2019-04-29 04:04:05 (62425): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-04-29 04:04:05 (62425): Guest Log: sysctl: "cannot stat %s" is an unknown key
2019-04-29 04:04:05 (62425): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-04-29 04:04:05 (62425): Guest Log: Segmentation fault
2019-04-29 04:04:05 (62425): Guest Log: automount ...
2019-04-29 04:04:07 (62425): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2019-04-29 04:04:07 (62425): Guest Log: automount over.
2019-04-29 04:04:07 (62425): Guest Log: Setting hostname to boot2docker Done.
2019-04-29 04:04:07 (62425): Guest Log: Mon Apr 29 04:04:04 UTC 2019 dhcp -------------------------------
2019-04-29 04:04:12 (62425): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2019-04-29 04:04:12 (62425): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1339)
2019-04-29 04:04:13 (62425): Guest Log: Mon Apr 29 04:04:10 UTC 2019 dhcp -------------------------------
2019-04-29 04:04:13 (62425): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-04-29 04:04:13 (62425): Guest Log: 00:00:00.000172 main     Log opened 2019-04-29T04:04:11.065989000Z
2019-04-29 04:04:13 (62425): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-04-29 04:04:13 (62425): Guest Log: 00:00:00.000172 main     Log opened 2019-04-29T04:04:11.065989000Z
2019-04-29 04:04:13 (62425): Guest Log: 00:00:00.003592 main     OS Product: Linux
2019-04-29 04:04:13 (62425): Guest Log: 00:00:00.003722 main     OS Release: 4.1.19-boot2docker
2019-04-29 04:04:13 (62425): Guest Log: 00:00:00.003592 main     OS Product: Linux
2019-04-29 04:04:13 (62425): Guest Log: 00:00:00.003722 main     OS Release: 4.1.19-boot2docker
2019-04-29 04:04:13 (62425): Guest Log: 00:00:00.006031 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-04-29 04:04:13 (62425): Guest Log: 00:00:00.006146 main     Executable: /sbin/VBoxService
2019-04-29 04:04:13 (62425): Guest Log: 00:00:00.006147 main     Process ID: 810
2019-04-29 04:04:13 (62425): Guest Log: 00:00:00.006149 main     Package type: LINUX_64BITS_GENERIC
2019-04-29 04:04:13 (62425): Guest Log: 00:00:00.006031 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-04-29 04:04:13 (62425): Guest Log: 00:00:00.006146 main     Executable: /sbin/VBoxService
2019-04-29 04:04:13 (62425): Guest Log: 00:00:00.006147 main     Process ID: 810
2019-04-29 04:04:13 (62425): Guest Log: 00:00:00.006149 main     Package type: LINUX_64BITS_GENERIC
2019-04-29 04:04:13 (62425): Guest Log: 00:00:00.024334 main     5.0.16 r105871 started. Verbose level = 0
2019-04-29 04:04:13 (62425): Guest Log: 00:00:00.024334 main     5.0.16 r105871 started. Verbose level = 0
2019-04-29 04:04:13 (62425): Guest Log: 00:00:00.047370 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2019-04-29 04:04:13 (62425): Guest Log: 00:00:00.047486 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2019-04-29 04:04:13 (62425): Guest Log: Mounting BOINC shared/...
2019-04-29 04:04:13 (62425): Guest Log: -------------------
2019-04-29 04:04:13 (62425): Guest Log: Mon Apr 29 02:04:13 UTC 2019
2019-04-29 04:04:18 (62425): Guest Log: 00:00:05.052956 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2019-04-29 04:04:18 (62425): Guest Log: Mon Apr 29 02:04:18 UTC 2019
2019-04-29 04:04:18 (62425): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2019-04-29 04:04:18 (62425): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2019-04-29 04:04:18 (62425): Guest Log:     inet 127.0.0.1/8 scope host lo
2019-04-29 04:04:18 (62425): Guest Log:        valid_lft forever preferred_lft forever
2019-04-29 04:04:18 (62425): Guest Log:     inet6 ::1/128 scope host 
2019-04-29 04:04:18 (62425): Guest Log:        valid_lft forever preferred_lft forever
2019-04-29 04:04:18 (62425): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2019-04-29 04:04:18 (62425): Guest Log:     link/ether 6a:6a:00:c2:32:4d brd ff:ff:ff:ff:ff:ff
2019-04-29 04:04:18 (62425): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2019-04-29 04:04:18 (62425): Guest Log:     link/ether 08:00:27:fb:b9:1e brd ff:ff:ff:ff:ff:ff
2019-04-29 04:04:18 (62425): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2019-04-29 04:04:18 (62425): Guest Log:        valid_lft forever preferred_lft forever
2019-04-29 04:04:18 (62425): Guest Log:     inet6 fe80::a00:27ff:fefb:b91e/64 scope link 
2019-04-29 04:04:18 (62425): Guest Log:        valid_lft forever preferred_lft forever
2019-04-29 04:04:18 (62425): Guest Log: -------------------
2019-04-29 04:04:18 (62425): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2019-04-29 04:04:18 (62425): Guest Log: Waiting for Docker daemon to start...
2019-04-29 04:04:19 (62425): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-04-29 04:04:19 (62425): Guest Log: Running boinc_app...
2019-04-29 04:04:19 (62425): Guest Log: Importing Docker image from BOINC...
2019-04-29 04:04:19 (62425): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-04-29 04:04:19 (62425): Guest Log: tmpfs                     2.6G    164.2M      2.5G   6% /
2019-04-29 04:04:19 (62425): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-04-29 04:04:19 (62425): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2019-04-29 04:04:19 (62425): Guest Log: shared                   91.4G     32.0G     59.4G  35% /root/shared
2019-04-29 04:04:19 (62425): Guest Log: tmpfs                     2.6G    164.2M      2.5G   6% /var/lib/docker/aufs
2019-04-29 04:04:25 (62425): Guest Log: 00:00:10.057067 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2019-04-29 04:04:30 (62425): Guest Log: doing docker load...
2019-04-29 04:04:45 (62425): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-04-29 04:04:45 (62425): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /
2019-04-29 04:04:45 (62425): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-04-29 04:04:45 (62425): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2019-04-29 04:04:45 (62425): Guest Log: shared                   91.4G     32.1G     59.3G  35% /root/shared
2019-04-29 04:04:45 (62425): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /var/lib/docker/aufs
2019-04-29 04:04:45 (62425): Guest Log:               total        used        free      shared  buff/cache   available
2019-04-29 04:04:45 (62425): Guest Log: Mem:           3007          48        2257         663         701        2257
2019-04-29 04:04:45 (62425): Guest Log: Swap:           701           0         701
2019-04-29 04:04:45 (62425): Guest Log: Building apps directory...
2019-04-29 04:09:00 (62425): Guest Log: Prerun diagnostics...
2019-04-29 04:09:00 (62425): Guest Log: REPOSITORY                    TAG                 IMAGE ID            CREATED             SIZE
2019-04-29 04:09:00 (62425): Guest Log: nanohub_apps_share64_matlab   4                   32c863520615        16 months ago       488.2 MB
2019-04-29 04:09:00 (62425): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2019-04-29 04:09:00 (62425): Guest Log: 499.0M	/var/lib/docker
2019-04-29 04:09:00 (62425): Guest Log:               total        used        free      shared  buff/cache   available
2019-04-29 04:09:00 (62425): Guest Log: Mem:           3007          53        2214         663         739        2245
2019-04-29 04:09:00 (62425): Guest Log: Swap:           701           0         701
2019-04-29 04:09:00 (62425): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-04-29 04:09:00 (62425): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /
2019-04-29 04:09:00 (62425): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-04-29 04:09:00 (62425): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2019-04-29 04:09:00 (62425): Guest Log: shared                   91.4G     32.9G     58.5G  36% /root/shared
2019-04-29 04:09:00 (62425): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /var/lib/docker/aufs
2019-04-29 04:09:00 (62425): Guest Log: Running... 
2019-04-29 04:09:00 (62425): Guest Log: 07191191_018.boinc
2019-04-29 04:09:00 (62425): Guest Log: 07191191_018.sh
2019-04-29 04:09:52 (62425): Guest Log: boinc_app exited (0)
2019-04-29 04:09:52 (62425): Guest Log: Saving results...
2019-04-29 04:09:52 (62425): Guest Log: 07191191_018_output.tar.gz
2019-04-29 04:09:52 (62425): VM Completion File Detected.
2019-04-29 04:09:52 (62425): Powering off VM.
2019-04-29 04:09:54 (62425): Successfully stopped VM.
2019-04-29 04:09:54 (62425): Deregistering VM. (boinc_e65cff6608fa913e, slot#57)
2019-04-29 04:09:55 (62425): Removing network bandwidth throttle group from VM.
2019-04-29 04:09:55 (62425): Removing storage controller(s) from VM.
2019-04-29 04:09:55 (62425): Removing VM from VirtualBox.
2019-04-29 04:09:55 (62425): Removing virtual ISO 9660 disk from VirtualBox.
04:10:00 (62425): called boinc_finish(0)

</stderr_txt>
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