Task 208265

Name 06474581_21_1
Workunit 138828
Created 16 Feb 2018, 22:25:08 UTC
Sent 16 Feb 2018, 22:25:20 UTC
Report deadline 17 Feb 2018, 6:25:20 UTC
Received 16 Feb 2018, 22:45:05 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 342
Run time 1 min 50 sec
CPU time 1 min 7 sec
Validate state Valid
Credit 2.39
Device peak FLOPS 4.08 GFLOPS
Application version boinc2docker v1.11 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 94.77 MB
Peak swap size 3.15 GB
Peak disk usage 489.78 MB

Stderr output

<core_client_version>7.4.22</core_client_version>
<![CDATA[
<stderr_txt>
2018-02-16 17:42:56 (18432): vboxwrapper (7.7.26197): starting
2018-02-16 17:43:01 (18432): Feature: Checkpoint interval offset (380 seconds)
2018-02-16 17:43:01 (18432): Detected: VirtualBox VboxManage Interface (Version: 5.0.2)
2018-02-16 17:43:01 (18432): Detected: Minimum checkpoint interval (600.000000 seconds)
2018-02-16 17:43:01 (18432): Create VM. (boinc_301f2316535dce02, slot#5)
2018-02-16 17:43:01 (18432): Updating drive controller type and model for desired configuration.
2018-02-16 17:43:16 (18432): Setting Memory Size for VM. (3072MB)
2018-02-16 17:43:16 (18432): Setting CPU Count for VM. (1)
2018-02-16 17:43:16 (18432): Setting Chipset Options for VM.
2018-02-16 17:43:17 (18432): Setting Boot Options for VM.
2018-02-16 17:43:17 (18432): Setting Network Configuration for NAT.
2018-02-16 17:43:18 (18432): Enabling VM Network Access.
2018-02-16 17:43:18 (18432): Disabling USB Support for VM.
2018-02-16 17:43:18 (18432): Disabling COM Port Support for VM.
2018-02-16 17:43:18 (18432): Disabling LPT Port Support for VM.
2018-02-16 17:43:18 (18432): Disabling Audio Support for VM.
2018-02-16 17:43:18 (18432): Disabling Clipboard Support for VM.
2018-02-16 17:43:19 (18432): Disabling Drag and Drop Support for VM.
2018-02-16 17:43:19 (18432): Adding storage controller(s) to VM.
2018-02-16 17:43:19 (18432): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2018-02-16 17:43:19 (18432): Adding VirtualBox Guest Additions to VM.
2018-02-16 17:43:19 (18432): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2018-02-16 17:43:19 (18432): Enabling shared directory for VM.
2018-02-16 17:43:20 (18432): Starting VM. (boinc_301f2316535dce02, slot#5)
2018-02-16 17:43:21 (18432): Successfully started VM. (PID = '19313')
2018-02-16 17:43:21 (18432): Reporting VM Process ID to BOINC.
2018-02-16 17:43:21 (18432): Guest Log: BIOS: VirtualBox 5.0.2
2018-02-16 17:43:21 (18432): VM state change detected. (old = 'poweroff', new = 'running')
2018-02-16 17:43:21 (18432): Preference change detected
2018-02-16 17:43:21 (18432): Setting CPU throttle for VM. (100%)
2018-02-16 17:43:21 (18432): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2018-02-16 17:43:23 (18432): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2018-02-16 17:43:23 (18432): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2018-02-16 17:43:23 (18432): Guest Log: BIOS: Boot from Hard Disk 0 failed
2018-02-16 17:43:23 (18432): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2018-02-16 17:43:23 (18432): Guest Log: BIOS: Booting from CD-ROM...
2018-02-16 17:43:23 (18432): Guest Log: BIOS: KBD: unsupported int 16h function 03
2018-02-16 17:43:23 (18432): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2018-02-16 17:43:24 (18432): Preference change detected
2018-02-16 17:43:24 (18432): Setting CPU throttle for VM. (100%)
2018-02-16 17:43:24 (18432): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2018-02-16 17:43:32 (18432): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2018-02-16 17:43:32 (18432): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2018-02-16 17:43:39 (18432): Guest Log: net.ipv4.ip_forward = 1
2018-02-16 17:43:39 (18432): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2018-02-16 17:43:39 (18432): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2018-02-16 17:43:39 (18432): Guest Log: sysctl: "cannot stat %s" is an unknown key
2018-02-16 17:43:39 (18432): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2018-02-16 17:43:39 (18432): Guest Log: Segmentation fault
2018-02-16 17:43:39 (18432): Guest Log: automount ...
2018-02-16 17:43:39 (18432): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2018-02-16 17:43:39 (18432): Guest Log: automount over.
2018-02-16 17:43:39 (18432): Guest Log: Setting hostname to boot2docker Done.
2018-02-16 17:43:39 (18432): Guest Log: Fri Feb 16 17:43:37 UTC 2018 dhcp -------------------------------
2018-02-16 17:43:41 (18432): Preference change detected
2018-02-16 17:43:41 (18432): Setting CPU throttle for VM. (100%)
2018-02-16 17:43:41 (18432): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2018-02-16 17:43:44 (18432): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2018-02-16 17:43:44 (18432): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1327)
2018-02-16 17:43:45 (18432): Guest Log: Fri Feb 16 17:43:43 UTC 2018 dhcp -------------------------------
2018-02-16 17:43:45 (18432): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2018-02-16 17:43:45 (18432): Guest Log: 00:00:00.000106 main     Log opened 2018-02-16T17:43:43.373512000Z
2018-02-16 17:43:45 (18432): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2018-02-16 17:43:45 (18432): Guest Log: 00:00:00.000106 main     Log opened 2018-02-16T17:43:43.373512000Z
2018-02-16 17:43:45 (18432): Guest Log: 00:00:00.003119 main     OS Product: Linux
2018-02-16 17:43:45 (18432): Guest Log: 00:00:00.003119 main     OS Product: Linux
2018-02-16 17:43:45 (18432): Guest Log: 00:00:00.004195 main     OS Release: 4.1.19-boot2docker
2018-02-16 17:43:45 (18432): Guest Log: 00:00:00.004251 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2018-02-16 17:43:45 (18432): Guest Log: 00:00:00.004304 main     Executable: /sbin/VBoxService
2018-02-16 17:43:45 (18432): Guest Log: 00:00:00.004306 main     Process ID: 856
2018-02-16 17:43:45 (18432): Guest Log: 00:00:00.004307 main     Package type: LINUX_64BITS_GENERIC
2018-02-16 17:43:45 (18432): Guest Log: 00:00:00.004195 main     OS Release: 4.1.19-boot2docker
2018-02-16 17:43:45 (18432): Guest Log: 00:00:00.004251 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2018-02-16 17:43:45 (18432): Guest Log: 00:00:00.004304 main     Executable: /sbin/VBoxService
2018-02-16 17:43:45 (18432): Guest Log: 00:00:000:00:00.008617 main     5.0.16 r105871 started. Verbose level = 0
2018-02-16 17:43:45 (18432): Guest Log: 0.004306 main     Process ID: 856
2018-02-16 17:43:45 (18432): Guest Log: 00:00:00.004307 main     Package type: LINUX_64BITS_GENERIC
2018-02-16 17:43:45 (18432): Guest Log: 00:00:00.008617 main     5.0.16 r105871 started. Verbose level = 0
2018-02-16 17:43:45 (18432): Guest Log: 00:00:00.020860 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2018-02-16 17:43:45 (18432): Guest Log: 00:00:00.020911 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2018-02-16 17:43:45 (18432): Guest Log: Mounting BOINC shared/...
2018-02-16 17:43:45 (18432): Guest Log: -------------------
2018-02-16 17:43:45 (18432): Guest Log: Fri Feb 16 22:43:45 UTC 2018
2018-02-16 17:43:50 (18432): Guest Log: 00:00:05.023580 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2018-02-16 17:43:50 (18432): Guest Log: Fri Feb 16 22:43:50 UTC 2018
2018-02-16 17:43:50 (18432): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2018-02-16 17:43:50 (18432): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2018-02-16 17:43:50 (18432): Guest Log:     inet 127.0.0.1/8 scope host lo
2018-02-16 17:43:50 (18432): Guest Log:        valid_lft forever preferred_lft forever
2018-02-16 17:43:50 (18432): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2018-02-16 17:43:50 (18432): Guest Log:     link/ether 92:d8:a4:bc:16:a7 brd ff:ff:ff:ff:ff:ff
2018-02-16 17:43:50 (18432): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2018-02-16 17:43:50 (18432): Guest Log:     link/ether 08:00:27:0c:d3:18 brd ff:ff:ff:ff:ff:ff
2018-02-16 17:43:50 (18432): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2018-02-16 17:43:50 (18432): Guest Log:        valid_lft forever preferred_lft forever
2018-02-16 17:43:50 (18432): Guest Log: -------------------
2018-02-16 17:43:50 (18432): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2018-02-16 17:43:50 (18432): Guest Log: Waiting for Docker daemon to start...
2018-02-16 17:43:51 (18432): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2018-02-16 17:43:51 (18432): Guest Log: Running boinc_app...
2018-02-16 17:43:51 (18432): Guest Log: Importing Docker image from BOINC...
2018-02-16 17:43:51 (18432): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-02-16 17:43:51 (18432): Guest Log: tmpfs                     2.6G    164.1M      2.5G   6% /
2018-02-16 17:43:51 (18432): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-02-16 17:43:51 (18432): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-02-16 17:43:51 (18432): Guest Log: shared                    1.6T    107.7G      1.5T   7% /root/shared
2018-02-16 17:43:51 (18432): Guest Log: tmpfs                     2.6G    164.1M      2.5G   6% /var/lib/docker/aufs
2018-02-16 17:43:55 (18432): Guest Log: 00:00:10.030607 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2018-02-16 17:43:55 (18432): Preference change detected
2018-02-16 17:43:55 (18432): Setting CPU throttle for VM. (100%)
2018-02-16 17:43:55 (18432): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2018-02-16 17:43:58 (18432): Guest Log: doing docker load...
2018-02-16 17:44:07 (18432): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-02-16 17:44:07 (18432): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /
2018-02-16 17:44:07 (18432): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-02-16 17:44:07 (18432): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-02-16 17:44:07 (18432): Guest Log: shared                    1.6T    107.2G      1.5T   7% /root/shared
2018-02-16 17:44:07 (18432): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /var/lib/docker/aufs
2018-02-16 17:44:07 (18432): Guest Log:               total        used        free      shared  buff/cache   available
2018-02-16 17:44:07 (18432): Guest Log: Mem:           3007          46        2258         663         702        2259
2018-02-16 17:44:07 (18432): Guest Log: Swap:           700           0         700
2018-02-16 17:44:07 (18432): Guest Log: Building apps directory...
2018-02-16 17:44:09 (18432): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2018-02-16 17:44:11 (18432): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077_links.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2018-02-16 17:44:11 (18432): Guest Log: mv /root/shared/appsSource/rappture /root/shared/apps/share64/debian7/environ.d
2018-02-16 17:44:49 (18432): Guest Log: Prerun diagnostics...
2018-02-16 17:44:49 (18432): Guest Log: REPOSITORY                    TAG                 IMAGE ID            CREATED             SIZE
2018-02-16 17:44:49 (18432): Guest Log: nanohub_apps_share64_matlab   4                   32c863520615        10 weeks ago        488.2 MB
2018-02-16 17:44:49 (18432): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2018-02-16 17:44:49 (18432): Guest Log: 499.0M	/var/lib/docker
2018-02-16 17:44:49 (18432): Guest Log:               total        used        free      shared  buff/cache   available
2018-02-16 17:44:49 (18432): Guest Log: Mem:           3007          46        2246         663         714        2256
2018-02-16 17:44:49 (18432): Guest Log: Swap:           700           0         700
2018-02-16 17:44:49 (18432): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-02-16 17:44:49 (18432): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /
2018-02-16 17:44:49 (18432): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-02-16 17:44:49 (18432): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-02-16 17:44:49 (18432): Guest Log: shared                    1.6T    110.4G      1.5T   7% /root/shared
2018-02-16 17:44:49 (18432): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /var/lib/docker/aufs
2018-02-16 17:44:49 (18432): Guest Log: Running... 
2018-02-16 17:44:49 (18432): Guest Log: 06474581_21.boinc
2018-02-16 17:44:49 (18432): Guest Log: 06474581_21.sh
2018-02-16 17:44:57 (18432): Guest Log: boinc_app exited (0)
2018-02-16 17:44:57 (18432): Guest Log: Saving results...
2018-02-16 17:44:57 (18432): Guest Log: 06474581_21_output.tar.gz
2018-02-16 17:44:57 (18432): VM Completion File Detected.
2018-02-16 17:44:57 (18432): Powering off VM.
2018-02-16 17:44:57 (18432): Successfully stopped VM.
2018-02-16 17:44:57 (18432): Deregistering VM. (boinc_301f2316535dce02, slot#5)
2018-02-16 17:44:57 (18432): Removing network bandwidth throttle group from VM.
2018-02-16 17:44:57 (18432): Removing storage controller(s) from VM.
2018-02-16 17:44:57 (18432): Removing VM from VirtualBox.
2018-02-16 17:44:57 (18432): Removing virtual ISO 9660 disk from VirtualBox.
17:45:02 (18432): called boinc_finish(0)

</stderr_txt>
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