Task 229261
| Name | 06495005_06_0 |
| Workunit | 149974 |
| Created | 27 Feb 2018, 16:00:23 UTC |
| Sent | 27 Feb 2018, 16:34:01 UTC |
| Report deadline | 28 Feb 2018, 0:34:01 UTC |
| Received | 27 Feb 2018, 17:42:05 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 194 (0x000000C2) EXIT_ABORTED_BY_CLIENT |
| Computer ID | 216 |
| Run time | 15 min 4 sec |
| CPU time | 5 min 55 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 2.22 GFLOPS |
| Application version | boinc2docker v1.11 (vbox64_mt) x86_64-pc-linux-gnu |
| Peak working set size | 93.80 MB |
| Peak swap size | 3.49 GB |
| Peak disk usage | 2.81 GB |
Stderr output
<core_client_version>7.4.23</core_client_version>
<![CDATA[
<message>
finish file present too long
</message>
<stderr_txt>
2018-02-27 11:35:14 (13929): vboxwrapper (7.7.26197): starting
2018-02-27 11:35:14 (13929): Feature: Checkpoint interval offset (209 seconds)
2018-02-27 11:35:14 (13929): Detected: VirtualBox VboxManage Interface (Version: 5.1.8)
2018-02-27 11:35:14 (13929): Detected: Minimum checkpoint interval (600.000000 seconds)
2018-02-27 11:35:14 (13929): Create VM. (boinc_93d596042ae9743d, slot#5)
2018-02-27 11:35:14 (13929): Updating drive controller type and model for desired configuration.
2018-02-27 11:35:48 (13929): Setting Memory Size for VM. (3072MB)
2018-02-27 11:35:48 (13929): Setting CPU Count for VM. (1)
2018-02-27 11:35:48 (13929): Setting Chipset Options for VM.
2018-02-27 11:35:48 (13929): Setting Boot Options for VM.
2018-02-27 11:35:48 (13929): Setting Network Configuration for NAT.
2018-02-27 11:35:48 (13929): Enabling VM Network Access.
2018-02-27 11:35:48 (13929): Disabling USB Support for VM.
2018-02-27 11:35:48 (13929): Disabling COM Port Support for VM.
2018-02-27 11:35:49 (13929): Disabling LPT Port Support for VM.
2018-02-27 11:35:49 (13929): Disabling Audio Support for VM.
2018-02-27 11:35:49 (13929): Disabling Clipboard Support for VM.
2018-02-27 11:35:49 (13929): Disabling Drag and Drop Support for VM.
2018-02-27 11:35:49 (13929): Adding storage controller(s) to VM.
2018-02-27 11:35:49 (13929): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2018-02-27 11:35:49 (13929): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2018-02-27 11:35:49 (13929): Enabling shared directory for VM.
2018-02-27 11:35:49 (13929): Starting VM. (boinc_93d596042ae9743d, slot#5)
2018-02-27 11:35:51 (13929): Successfully started VM. (PID = '15318')
2018-02-27 11:35:51 (13929): Reporting VM Process ID to BOINC.
2018-02-27 11:35:51 (13929): Guest Log: BIOS: VirtualBox 5.1.8
2018-02-27 11:35:51 (13929): VM state change detected. (old = 'poweroff', new = 'running')
2018-02-27 11:35:51 (13929): Preference change detected
2018-02-27 11:35:51 (13929): Setting CPU throttle for VM. (75%)
2018-02-27 11:35:51 (13929): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2018-02-27 11:35:53 (13929): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2018-02-27 11:35:53 (13929): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2018-02-27 11:35:53 (13929): Guest Log: BIOS: Boot from Hard Disk 0 failed
2018-02-27 11:35:53 (13929): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2018-02-27 11:35:53 (13929): Guest Log: BIOS: Booting from CD-ROM...
2018-02-27 11:35:55 (13929): Guest Log: BIOS: KBD: unsupported int 16h function 03
2018-02-27 11:35:55 (13929): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000
2018-02-27 11:36:16 (13929): Guest Log: net.ipv4.ip_forward = 1
2018-02-27 11:36:16 (13929): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2018-02-27 11:36:16 (13929): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2018-02-27 11:36:16 (13929): Guest Log: sysctl: "cannot stat %s" is an unknown key
2018-02-27 11:36:16 (13929): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2018-02-27 11:36:16 (13929): Guest Log: Segmentation fault
2018-02-27 11:36:16 (13929): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2018-02-27 11:36:16 (13929): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2018-02-27 11:36:17 (13929): Guest Log: automount ...
2018-02-27 11:36:17 (13929): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2018-02-27 11:36:17 (13929): Guest Log: automount over.
2018-02-27 11:36:17 (13929): Guest Log: [1;32mSetting hostname to [1;35mboot2docker[0;39m [1;32mDone.[0;39m
2018-02-27 11:36:17 (13929): Guest Log: Tue Feb 27 11:36:15 UTC 2018 dhcp -------------------------------
2018-02-27 11:36:23 (13929): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXCPU:00 (1283)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1286)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1288)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1289)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1290)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1291)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1292)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1293)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1294)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1295)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6 (1296)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6/event5 (1297)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1298)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1299)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1300)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1301)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1302)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1303)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1304)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1305)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1306)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1307)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1308)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1309)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1310)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1311)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1312)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1313)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1314)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1315)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1316)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1317)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1318)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1319)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1320)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1321)
2018-02-27 11:36:23 (13929): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1322)
2018-02-27 11:36:24 (13929): Guest Log: Tue Feb 27 11:36:22 UTC 2018 dhcp -------------------------------
2018-02-27 11:36:25 (13929): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar 4 2016 17:38:55) release log
2018-02-27 11:36:25 (13929): Guest Log: 00:00:00.000711 main Log opened 2018-02-27T11:36:22.729739000Z
2018-02-27 11:36:25 (13929): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar 4 2016 17:38:55) release log
2018-02-27 11:36:25 (13929): Guest Log: 00:00:00.034951 main OS Product: Linux
2018-02-27 11:36:25 (13929): Guest Log: 00:00:00.035030 main OS Release: 4.1.19-boot2docker
2018-02-27 11:36:25 (13929): Guest Log: 00:00:00.035094 main OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2018-02-27 11:36:25 (13929): Guest Log: 00:00:00.035155 main Executable: /sbin/VBoxService
2018-02-27 11:36:25 (13929): Guest Log: 00:00:00.035157 main Process ID: 723
2018-02-27 11:36:25 (13929): Guest Log: 00:00:00.035158 main Package type: LINUX_64BITS_GENERIC
2018-02-27 11:36:25 (13929): Guest Log: 00:00:00.000711 main Log opened 2018-02-27T11:36:22.729739000Z
2018-02-27 11:36:25 (13929): Guest Log: 00:00:00.034951 main OS Product: Linux
2018-02-27 11:36:25 (13929): Guest Log: 00:00:00.035030 main OS Release: 4.1.19-boot2docker
2018-02-27 11:36:25 (13929): Guest Log: 00:00:00.035094 main OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2018-02-27 11:36:25 (13929): Guest Log: 00:00:00.035155 main Ex00:00:00.045397 main 5.0.16 r105871 started. Verbose level = 0
2018-02-27 11:36:25 (13929): Guest Log: ecutable: /sbin/VBoxService
2018-02-27 11:36:25 (13929): Guest Log: 00:00:00.035157 main Process ID: 723
2018-02-27 11:36:25 (13929): Guest Log: 00:00:00.035158 main Package type: LINUX_64BITS_GENERIC
2018-02-27 11:36:25 (13929): Guest Log: 00:00:00.045397 main 5.0.16 r105871 started. Verbose level = 0
2018-02-27 11:36:25 (13929): Guest Log: 00:00:00.074868 vminfo rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2018-02-27 11:36:25 (13929): Guest Log: 00:00:00.076983 vminfo Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2018-02-27 11:36:25 (13929): Guest Log: Mounting BOINC shared/...
2018-02-27 11:36:25 (13929): Guest Log: -------------------
2018-02-27 11:36:25 (13929): Guest Log: Tue Feb 27 16:36:24 UTC 2018
2018-02-27 11:36:30 (13929): Guest Log: 00:00:05.077962 vminfo Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2018-02-27 11:36:30 (13929): Guest Log: Tue Feb 27 16:36:29 UTC 2018
2018-02-27 11:36:30 (13929): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default
2018-02-27 11:36:30 (13929): Guest Log: link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2018-02-27 11:36:30 (13929): Guest Log: inet 127.0.0.1/8 scope host lo
2018-02-27 11:36:30 (13929): Guest Log: valid_lft forever preferred_lft forever
2018-02-27 11:36:30 (13929): Guest Log: link/ether b2:45:56:be:84:5a brd ff:ff:ff:ff:ff:ff
2018-02-27 11:36:30 (13929): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2018-02-27 11:36:30 (13929): Guest Log: link/ether 08:00:27:3a:7c:e3 brd ff:ff:ff:ff:ff:ff
2018-02-27 11:36:30 (13929): Guest Log: inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2018-02-27 11:36:30 (13929): Guest Log: valid_lft forever preferred_lft forever
2018-02-27 11:36:30 (13929): Guest Log: -------------------
2018-02-27 11:36:30 (13929): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2018-02-27 11:36:30 (13929): Guest Log: Waiting for Docker daemon to start...
2018-02-27 11:36:32 (13929): Guest Log: REPOSITORY TAG IMAGE ID CREATED SIZE
2018-02-27 11:36:32 (13929): Guest Log: Running boinc_app...
2018-02-27 11:36:32 (13929): Guest Log: Importing Docker image from BOINC...
2018-02-27 11:36:32 (13929): Guest Log: Filesystem Size Used Available Use% Mounted on
2018-02-27 11:36:32 (13929): Guest Log: tmpfs 2.6G 164.1M 2.5G 6% /
2018-02-27 11:36:32 (13929): Guest Log: tmpfs 1.5G 0 1.5G 0% /dev/shm
2018-02-27 11:36:32 (13929): Guest Log: cgroup 1.5G 0 1.5G 0% /sys/fs/cgroup
2018-02-27 11:36:32 (13929): Guest Log: shared 140.1G 34.1G 105.9G 24% /root/shared
2018-02-27 11:36:32 (13929): Guest Log: tmpfs 2.6G 164.1M 2.5G 6% /var/lib/docker/aufs
2018-02-27 11:36:35 (13929): Guest Log: 00:00:10.103408 vminfo Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2018-02-27 11:36:49 (13929): Guest Log: doing docker load...
2018-02-27 11:37:14 (13929): Guest Log: Filesystem Size Used Available Use% Mounted on
2018-02-27 11:37:14 (13929): Guest Log: tmpfs 2.6G 663.1M 2.0G 24% /
2018-02-27 11:37:14 (13929): Guest Log: tmpfs 1.5G 0 1.5G 0% /dev/shm
2018-02-27 11:37:14 (13929): Guest Log: cgroup 1.5G 0 1.5G 0% /sys/fs/cgroup
2018-02-27 11:37:14 (13929): Guest Log: shared 140.1G 33.5G 106.6G 24% /root/shared
2018-02-27 11:37:14 (13929): Guest Log: tmpfs 2.6G 663.1M 2.0G 24% /var/lib/docker/aufs
2018-02-27 11:37:14 (13929): Guest Log: total used free shared buff/cache available
2018-02-27 11:37:14 (13929): Guest Log: Mem: 3007 50 2255 663 701 2255
2018-02-27 11:37:14 (13929): Guest Log: Swap: 703 0 703
2018-02-27 11:37:14 (13929): Guest Log: Building apps directory...
2018-02-27 11:37:15 (13929): Guest Log: tar: ./r15/bin/main_mcr/.META/manifest.xml: time stamp 2035-10-29 06:32:22 is 557502906.790842628 s in the future
2018-02-27 11:37:22 (13929): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2018-02-27 11:37:53 (13929): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077_links.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2018-02-27 11:37:53 (13929): Guest Log: mv /root/shared/appsSource/rappture /root/shared/apps/share64/debian7/environ.d
2018-02-27 11:54:12 (13929): Guest Log: Prerun diagnostics...
2018-02-27 11:54:12 (13929): Guest Log: REPOSITORY TAG IMAGE ID CREATED SIZE
2018-02-27 11:54:12 (13929): Guest Log: nanohub_apps_share64_matlab 4 32c863520615 11 weeks ago 488.2 MB
2018-02-27 11:54:12 (13929): Guest Log: CONTAINER ID IMAGE COMMAND CREATED STATUS PORTS NAMES
2018-02-27 11:54:13 (13929): Guest Log: 499.0M /var/lib/docker
2018-02-27 11:54:13 (13929): Guest Log: total used free shared buff/cache available
2018-02-27 11:54:13 (13929): Guest Log: Mem: 3007 38 2231 663 737 2261
2018-02-27 11:54:13 (13929): Guest Log: Swap: 703 0 703
2018-02-27 11:54:13 (13929): Guest Log: Filesystem Size Used Available Use% Mounted on
2018-02-27 11:54:13 (13929): Guest Log: tmpfs 2.6G 663.1M 2.0G 24% /
2018-02-27 11:54:13 (13929): Guest Log: tmpfs 1.5G 0 1.5G 0% /dev/shm
2018-02-27 11:54:13 (13929): Guest Log: cgroup 1.5G 0 1.5G 0% /sys/fs/cgroup
2018-02-27 11:54:13 (13929): Guest Log: shared 140.1G 45.1G 95.0G 32% /root/shared
2018-02-27 11:54:13 (13929): Guest Log: tmpfs 2.6G 663.1M 2.0G 24% /var/lib/docker/aufs
2018-02-27 11:54:13 (13929): Guest Log: Running...
2018-02-27 11:54:13 (13929): Guest Log: 06495005_06.boinc
2018-02-27 11:54:13 (13929): Guest Log: 06495005_06.sh
2018-02-27 11:58:26 (13929): Guest Log: boinc_app exited (0)
2018-02-27 11:58:26 (13929): Guest Log: Saving results...
2018-02-27 11:58:26 (13929): Guest Log: 06495005_06_output.tar.gz
2018-02-27 11:58:26 (13929): VM Completion File Detected.
2018-02-27 11:58:26 (13929): Powering off VM.
2018-02-27 11:58:27 (13929): Successfully stopped VM.
2018-02-27 11:58:27 (13929): Deregistering VM. (boinc_93d596042ae9743d, slot#5)
2018-02-27 11:58:27 (13929): Removing network bandwidth throttle group from VM.
2018-02-27 11:58:27 (13929): Removing storage controller(s) from VM.
2018-02-27 11:58:27 (13929): Removing VM from VirtualBox.
2018-02-27 11:58:27 (13929): Removing virtual ISO 9660 disk from VirtualBox.
11:58:32 (13929): called boinc_finish(0)
</stderr_txt>
]]>
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