Task 265000

Name 06674116_12_4
Workunit 166755
Created 18 Jun 2018, 0:00:38 UTC
Sent 18 Jun 2018, 0:36:22 UTC
Report deadline 18 Jun 2018, 8:36:22 UTC
Received 18 Jun 2018, 6:36:04 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 219
Run time 5 hours 27 min 38 sec
CPU time 4 hours 13 min 28 sec
Validate state Valid
Credit 21.79
Device peak FLOPS 2.23 GFLOPS
Application version boinc2docker v1.11 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 1.87 GB
Peak swap size 3.74 GB
Peak disk usage 699.21 MB

Stderr output

<core_client_version>7.4.23</core_client_version>
<![CDATA[
<stderr_txt>
2018-06-17 21:06:47 (29444): vboxwrapper (7.7.26197): starting
2018-06-17 21:06:48 (29444): Feature: Checkpoint interval offset (68 seconds)
2018-06-17 21:06:48 (29444): Detected: VirtualBox VboxManage Interface (Version: 5.1.8)
2018-06-17 21:06:48 (29444): Detected: Minimum checkpoint interval (600.000000 seconds)
2018-06-17 21:06:48 (29444): Create VM. (boinc_65d6a451417d1a9c, slot#1)
2018-06-17 21:06:48 (29444): Updating drive controller type and model for desired configuration.
2018-06-17 21:06:49 (29444): Setting Memory Size for VM. (3072MB)
2018-06-17 21:06:49 (29444): Setting CPU Count for VM. (1)
2018-06-17 21:06:49 (29444): Setting Chipset Options for VM.
2018-06-17 21:06:49 (29444): Setting Boot Options for VM.
2018-06-17 21:06:49 (29444): Setting Network Configuration for NAT.
2018-06-17 21:06:49 (29444): Enabling VM Network Access.
2018-06-17 21:06:50 (29444): Disabling USB Support for VM.
2018-06-17 21:06:50 (29444): Disabling COM Port Support for VM.
2018-06-17 21:06:50 (29444): Disabling LPT Port Support for VM.
2018-06-17 21:06:50 (29444): Disabling Audio Support for VM.
2018-06-17 21:06:50 (29444): Disabling Clipboard Support for VM.
2018-06-17 21:06:50 (29444): Disabling Drag and Drop Support for VM.
2018-06-17 21:06:50 (29444): Adding storage controller(s) to VM.
2018-06-17 21:06:50 (29444): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2018-06-17 21:06:51 (29444): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2018-06-17 21:06:51 (29444): Enabling shared directory for VM.
2018-06-17 21:06:51 (29444): Starting VM. (boinc_65d6a451417d1a9c, slot#1)
2018-06-17 21:06:54 (29444): Successfully started VM. (PID = '30050')
2018-06-17 21:06:54 (29444): Reporting VM Process ID to BOINC.
2018-06-17 21:06:54 (29444): Guest Log: BIOS: VirtualBox 5.1.8
2018-06-17 21:06:54 (29444): VM state change detected. (old = 'poweroff', new = 'running')
2018-06-17 21:06:54 (29444): Preference change detected
2018-06-17 21:06:54 (29444): Setting CPU throttle for VM. (75%)
2018-06-17 21:06:54 (29444): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2018-06-17 21:06:56 (29444): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2018-06-17 21:06:56 (29444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2018-06-17 21:06:56 (29444): Guest Log: BIOS: Boot from Hard Disk 0 failed
2018-06-17 21:06:56 (29444): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2018-06-17 21:06:56 (29444): Guest Log: BIOS: Booting from CD-ROM...
2018-06-17 21:06:58 (29444): Guest Log: BIOS: KBD: unsupported int 16h function 03
2018-06-17 21:06:58 (29444): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2018-06-17 21:07:18 (29444): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2018-06-17 21:07:18 (29444): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2018-06-17 21:07:19 (29444): Guest Log: net.ipv4.ip_forward = 1
2018-06-17 21:07:19 (29444): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2018-06-17 21:07:19 (29444): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2018-06-17 21:07:19 (29444): Guest Log: sysctl: "cannot stat %s" is an unknown key
2018-06-17 21:07:19 (29444): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2018-06-17 21:07:19 (29444): Guest Log: Segmentation fault
2018-06-17 21:07:19 (29444): Guest Log: automount ...
2018-06-17 21:07:20 (29444): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2018-06-17 21:07:20 (29444): Guest Log: automount over.
2018-06-17 21:07:20 (29444): Guest Log: Setting hostname to boot2docker Done.
2018-06-17 21:07:20 (29444): Guest Log: Sun Jun 17 21:07:18 UTC 2018 dhcp -------------------------------
2018-06-17 21:07:26 (29444): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2018-06-17 21:07:26 (29444): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1289)
2018-06-17 21:07:26 (29444): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1290)
2018-06-17 21:07:26 (29444): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6 (1297)
2018-06-17 21:07:26 (29444): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6/event5 (1298)
2018-06-17 21:07:26 (29444): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1299)
2018-06-17 21:07:26 (29444): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1300)
2018-06-17 21:07:26 (29444): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1301)
2018-06-17 21:07:26 (29444): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1302)
2018-06-17 21:07:26 (29444): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1303)
2018-06-17 21:07:26 (29444): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1304)
2018-06-17 21:07:26 (29444): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1305)
2018-06-17 21:07:26 (29444): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1306)
2018-06-17 21:07:26 (29444): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1307)
2018-06-17 21:07:26 (29444): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1309)
2018-06-17 21:07:26 (29444): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1310)
2018-06-17 21:07:26 (29444): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1311)
2018-06-17 21:07:26 (29444): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1312)
2018-06-17 21:07:26 (29444): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1313)
2018-06-17 21:07:26 (29444): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1314)
2018-06-17 21:07:26 (29444): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1315)
2018-06-17 21:07:26 (29444): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1316)
2018-06-17 21:07:26 (29444): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1317)
2018-06-17 21:07:26 (29444): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1322)
2018-06-17 21:07:27 (29444): Guest Log: Sun Jun 17 21:07:25 UTC 2018 dhcp -------------------------------
2018-06-17 21:07:28 (29444): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2018-06-17 21:07:28 (29444): Guest Log: 00:00:00.000740 main     Log opened 2018-06-17T21:07:26.068260000Z
2018-06-17 21:07:28 (29444): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2018-06-17 21:07:28 (29444): Guest Log: 00:00:00.000740 main     Log opened 2018-06-17T21:07:26.068260000Z
2018-06-17 21:07:28 (29444): Guest Log: 00:00:00.006823 main     OS Product: Linux
2018-06-17 21:07:28 (29444): Guest Log: 00:00:00.006891 main     OS Release: 4.1.19-boot2docker
2018-06-17 21:07:28 (29444): Guest Log: 00:00:00.006949 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2018-06-17 21:07:28 (29444): Guest Log: 00:00:00.007016 main     Executable: /sbin/VBoxService
2018-06-17 21:07:28 (29444): Guest Log: 00:00:00.007018 main     Process ID: 748
2018-06-17 21:07:28 (29444): Guest Log: 00:00:00.007019 main     Package type: LINUX_64BITS_GENERIC
2018-06-17 21:07:28 (29444): Guest Log: 00:000:00:00.008110 main     5.0.16 r105871 started. Verbose level = 0
2018-06-17 21:07:28 (29444): Guest Log: 000:00:00.060787 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2018-06-17 21:07:28 (29444): Guest Log: 00:00:00.061038 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2018-06-17 21:07:28 (29444): Guest Log: :00.006823 main     OS Product: Linux
2018-06-17 21:07:28 (29444): Guest Log: 00:00:00.006891 main     OS Release: 4.1.19-boot2docker
2018-06-17 21:07:28 (29444): Guest Log: 00:00:00.006949 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2018-06-17 21:07:28 (29444): Guest Log: 00:00:00.007016 main     Executable: /sbin/VBoxService
2018-06-17 21:07:28 (29444): Guest Log: 00:00:00.007018 main     Process ID: 748
2018-06-17 21:07:28 (29444): Guest Log: 00:00:00.007019 main     Package type: LINUX_64BITS_GENERIC
2018-06-17 21:07:28 (29444): Guest Log: 00:00:00.008110 main     5.0.16 r105871 started. Verbose level = 0
2018-06-17 21:07:28 (29444): Guest Log: Mounting BOINC shared/...
2018-06-17 21:07:28 (29444): Guest Log: -------------------
2018-06-17 21:07:28 (29444): Guest Log: Mon Jun 18 01:07:28 UTC 2018
2018-06-17 21:07:33 (29444): Guest Log: 00:00:05.077430 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2018-06-17 21:07:33 (29444): Guest Log: Mon Jun 18 01:07:33 UTC 2018
2018-06-17 21:07:33 (29444): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2018-06-17 21:07:33 (29444): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2018-06-17 21:07:33 (29444): Guest Log:     inet 127.0.0.1/8 scope host lo
2018-06-17 21:07:33 (29444): Guest Log:        valid_lft forever preferred_lft forever
2018-06-17 21:07:33 (29444): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2018-06-17 21:07:33 (29444): Guest Log:     link/ether 56:a9:17:a7:06:73 brd ff:ff:ff:ff:ff:ff
2018-06-17 21:07:33 (29444): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2018-06-17 21:07:33 (29444): Guest Log:     link/ether 08:00:27:12:b1:dd brd ff:ff:ff:ff:ff:ff
2018-06-17 21:07:33 (29444): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2018-06-17 21:07:33 (29444): Guest Log:        valid_lft forever preferred_lft forever
2018-06-17 21:07:33 (29444): Guest Log: -------------------
2018-06-17 21:07:33 (29444): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2018-06-17 21:07:33 (29444): Guest Log: Waiting for Docker daemon to start...
2018-06-17 21:07:35 (29444): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2018-06-17 21:07:35 (29444): Guest Log: Running boinc_app...
2018-06-17 21:07:35 (29444): Guest Log: Importing Docker image from BOINC...
2018-06-17 21:07:35 (29444): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-06-17 21:07:35 (29444): Guest Log: tmpfs                     2.6G    164.1M      2.5G   6% /
2018-06-17 21:07:35 (29444): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-06-17 21:07:35 (29444): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-06-17 21:07:35 (29444): Guest Log: shared                  916.3G     75.9G    840.4G   8% /root/shared
2018-06-17 21:07:35 (29444): Guest Log: tmpfs                     2.6G    164.1M      2.5G   6% /var/lib/docker/aufs
2018-06-17 21:07:38 (29444): Guest Log: 00:00:10.078234 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2018-06-17 21:07:53 (29444): Guest Log: doing docker load...
2018-06-17 21:08:17 (29444): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-06-17 21:08:17 (29444): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /
2018-06-17 21:08:17 (29444): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-06-17 21:08:17 (29444): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-06-17 21:08:17 (29444): Guest Log: shared                  916.3G     75.7G    840.5G   8% /root/shared
2018-06-17 21:08:17 (29444): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /var/lib/docker/aufs
2018-06-17 21:08:17 (29444): Guest Log:               total        used        free      shared  buff/cache   available
2018-06-17 21:08:17 (29444): Guest Log: Mem:           3007          49        2256         663         701        2256
2018-06-17 21:08:17 (29444): Guest Log: Swap:           701           0         701
2018-06-17 21:08:17 (29444): Guest Log: Building apps directory...
2018-06-17 21:08:20 (29444): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2018-06-17 21:08:33 (29444): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077_links.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2018-06-17 21:08:33 (29444): Guest Log: mv /root/shared/appsSource/rappture /root/shared/apps/share64/debian7/environ.d
2018-06-17 21:10:34 (29444): Guest Log: Prerun diagnostics...
2018-06-17 21:10:34 (29444): Guest Log: REPOSITORY                    TAG                 IMAGE ID            CREATED             SIZE
2018-06-17 21:10:34 (29444): Guest Log: nanohub_apps_share64_matlab   4                   32c863520615        6 months ago        488.2 MB
2018-06-17 21:10:34 (29444): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2018-06-17 21:10:34 (29444): Guest Log: 499.0M	/var/lib/docker
2018-06-17 21:10:34 (29444): Guest Log:               total        used        free      shared  buff/cache   available
2018-06-17 21:10:34 (29444): Guest Log: Mem:           3007          51        2242         663         713        2252
2018-06-17 21:10:34 (29444): Guest Log: Swap:           701           0         701
2018-06-17 21:10:34 (29444): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-06-17 21:10:34 (29444): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /
2018-06-17 21:10:34 (29444): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-06-17 21:10:34 (29444): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-06-17 21:10:34 (29444): Guest Log: shared                  916.3G     76.1G    840.2G   8% /root/shared
2018-06-17 21:10:34 (29444): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /var/lib/docker/aufs
2018-06-17 21:10:34 (29444): Guest Log: Running... 
2018-06-17 21:10:35 (29444): Guest Log: 06674116_12.boinc
2018-06-17 21:10:35 (29444): Guest Log: 06674116_12.sh
2018-06-17 22:45:57 (29444): Status Report: Elapsed Time: '6000.760475'
2018-06-17 22:45:57 (29444): Status Report: CPU Time: '4556.900000'
2018-06-18 00:25:00 (29444): Status Report: Elapsed Time: '12000.771878'
2018-06-18 00:25:00 (29444): Status Report: CPU Time: '9143.770000'
2018-06-18 02:04:03 (29444): Status Report: Elapsed Time: '18001.742997'
2018-06-18 02:04:03 (29444): Status Report: CPU Time: '13741.610000'
2018-06-18 02:35:47 (29444): Guest Log: boinc_app exited (0)
2018-06-18 02:35:47 (29444): Guest Log: Saving results...
2018-06-18 02:35:47 (29444): Guest Log: 06674116_12_output.tar.gz
2018-06-18 02:35:47 (29444): VM Completion File Detected.
2018-06-18 02:35:47 (29444): Powering off VM.
2018-06-18 02:35:48 (29444): Successfully stopped VM.
2018-06-18 02:35:48 (29444): Deregistering VM. (boinc_65d6a451417d1a9c, slot#1)
2018-06-18 02:35:48 (29444): Removing network bandwidth throttle group from VM.
2018-06-18 02:35:48 (29444): Removing storage controller(s) from VM.
2018-06-18 02:35:49 (29444): Removing VM from VirtualBox.
2018-06-18 02:35:49 (29444): Removing virtual ISO 9660 disk from VirtualBox.
02:35:54 (29444): called boinc_finish(0)

</stderr_txt>
]]>


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