Task 266046

Name 06674650_01_3
Workunit 167553
Created 19 Jun 2018, 10:28:00 UTC
Sent 19 Jun 2018, 10:28:15 UTC
Report deadline 19 Jun 2018, 18:28:15 UTC
Received 19 Jun 2018, 14:37:49 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 426
Run time 4 hours 5 min 47 sec
CPU time 3 hours 56 min 58 sec
Validate state Valid
Credit 86.96
Device peak FLOPS 2.64 GFLOPS
Application version boinc2docker v1.11 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 120.18 MB
Peak swap size 3.84 GB
Peak disk usage 795.79 MB

Stderr output

<core_client_version>7.6.31</core_client_version>
<![CDATA[
<stderr_txt>
2018-06-19 04:29:25 (16239): vboxwrapper (7.7.26197): starting
2018-06-19 04:29:25 (16239): Feature: Checkpoint interval offset (426 seconds)
2018-06-19 04:29:25 (16239): Detected: VirtualBox VboxManage Interface (Version: 5.1.26)
2018-06-19 04:29:26 (16239): Detected: Minimum checkpoint interval (600.000000 seconds)
2018-06-19 04:29:26 (16239): Create VM. (boinc_c7cc7301300349ee, slot#14)
2018-06-19 04:29:26 (16239): Updating drive controller type and model for desired configuration.
2018-06-19 04:29:27 (16239): Setting Memory Size for VM. (3072MB)
2018-06-19 04:29:27 (16239): Setting CPU Count for VM. (1)
2018-06-19 04:29:27 (16239): Setting Chipset Options for VM.
2018-06-19 04:29:28 (16239): Setting Boot Options for VM.
2018-06-19 04:29:28 (16239): Setting Network Configuration for NAT.
2018-06-19 04:29:28 (16239): Enabling VM Network Access.
2018-06-19 04:29:29 (16239): Disabling USB Support for VM.
2018-06-19 04:29:29 (16239): Disabling COM Port Support for VM.
2018-06-19 04:29:29 (16239): Disabling LPT Port Support for VM.
2018-06-19 04:29:30 (16239): Disabling Audio Support for VM.
2018-06-19 04:29:30 (16239): Disabling Clipboard Support for VM.
2018-06-19 04:29:31 (16239): Disabling Drag and Drop Support for VM.
2018-06-19 04:29:31 (16239): Adding storage controller(s) to VM.
2018-06-19 04:29:31 (16239): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2018-06-19 04:29:32 (16239): Adding VirtualBox Guest Additions to VM.
2018-06-19 04:29:32 (16239): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2018-06-19 04:29:32 (16239): Enabling shared directory for VM.
2018-06-19 04:29:33 (16239): Starting VM. (boinc_c7cc7301300349ee, slot#14)
2018-06-19 04:29:36 (16239): Successfully started VM. (PID = '17814')
2018-06-19 04:29:36 (16239): Reporting VM Process ID to BOINC.
2018-06-19 04:29:37 (16239): Guest Log: BIOS: VirtualBox 5.1.26
2018-06-19 04:29:38 (16239): VM state change detected. (old = 'poweroff', new = 'running')
2018-06-19 04:29:38 (16239): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2018-06-19 04:29:38 (16239): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2018-06-19 04:29:38 (16239): Guest Log: BIOS: Boot from Hard Disk 0 failed
2018-06-19 04:29:38 (16239): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2018-06-19 04:29:38 (16239): Guest Log: BIOS: Booting from CD-ROM...
2018-06-19 04:29:40 (16239): Preference change detected
2018-06-19 04:29:40 (16239): Setting CPU throttle for VM. (100%)
2018-06-19 04:29:40 (16239): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 600 seconds))
2018-06-19 04:29:42 (16239): Guest Log: BIOS: KBD: unsupported int 16h function 03
2018-06-19 04:29:42 (16239): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2018-06-19 04:29:52 (16239): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2018-06-19 04:29:52 (16239): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2018-06-19 04:29:53 (16239): Guest Log: net.ipv4.ip_forward = 1
2018-06-19 04:29:53 (16239): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2018-06-19 04:29:53 (16239): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2018-06-19 04:29:53 (16239): Guest Log: sysctl: "cannot stat %s" is an unknown key
2018-06-19 04:29:53 (16239): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2018-06-19 04:29:53 (16239): Guest Log: Segmentation fault
2018-06-19 04:29:53 (16239): Guest Log: automount ...
2018-06-19 04:29:53 (16239): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2018-06-19 04:29:53 (16239): Guest Log: automount over.
2018-06-19 04:29:53 (16239): Guest Log: Setting hostname to boot2docker Done.
2018-06-19 04:29:53 (16239): Guest Log: Tue Jun 19 04:29:51 UTC 2018 dhcp -------------------------------
2018-06-19 04:29:57 (16239): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1081)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00 (1307)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1308)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1309)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1310)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1311)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1312)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1313)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1314)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1315)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1316)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1317)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1318)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1319)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1320)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6 (1321)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6/event5 (1322)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1323)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1324)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1325)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1326)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1327)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1328)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1329)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1330)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1331)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1332)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1333)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1334)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1335)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1336)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1337)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1338)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1339)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1340)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1341)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1342)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1343)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1344)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1345)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1346)
2018-06-19 04:29:57 (16239): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1347)
2018-06-19 04:29:59 (16239): Guest Log: Tue Jun 19 04:29:57 UTC 2018 dhcp -------------------------------
2018-06-19 04:29:59 (16239): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2018-06-19 04:29:59 (16239): Guest Log: 00:00:00.000118 main     Log opened 2018-06-19T04:29:57.361075000Z
2018-06-19 04:29:59 (16239): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2018-06-19 04:29:59 (16239): Guest Log: 00:00:00.000118 main     Log opened 2018-06-19T04:29:57.361075000Z
2018-06-19 04:29:59 (16239): Guest Log: 00:00:00.003572 main     OS Product: Linux
2018-06-19 04:29:59 (16239): Guest Log: 00:00:00.003632 main     OS Release: 4.1.19-boot2docker
2018-06-19 04:29:59 (16239): Guest Log: 00:00:00.003681 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2018-06-19 04:29:59 (16239): Guest Log: 00:00:00.003725 main     Executable: /sbin/VBoxService
2018-06-19 04:29:59 (16239): Guest Log: 00:00:00.003727 main     Process ID: 835
2018-06-19 04:29:59 (16239): Guest Log: 00:00:00.003728 main     Package type: LINUX_64BITS_GENERIC
2018-06-19 04:29:59 (16239): Guest Log: 00:00:00.003572 main     OS Product: Linux
2018-06-19 04:29:59 (16239): Guest Log: 00:00:00.003632 main     OS Release: 4.1.19-boot2docker
2018-06-19 04:29:59 (16239): Guest Log: 00:00:00.003681 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2018-06-19 04:29:59 (16239): Guest Log: 00:00:00.003725 main     Executable: /sbin/VBoxService
2018-06-19 04:29:59 (16239): Guest Log: 00:00:00.003727 main     Process ID: 835
2018-06-19 04:29:59 (16239): Guest Log: 00:00:00.003728 main     Package type: LINUX_64BITS_GENERIC
2018-06-19 04:29:59 (16239): Guest Log: 00:00:00.051494 main     5.0.16 r105871 started. Verbose level = 0
2018-06-19 04:29:59 (16239): Guest Log: 00:00:00.051494 main     5.0.16 r105871 started. Verbose level = 0
2018-06-19 04:29:59 (16239): Guest Log: 00:00:00.081232 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2018-06-19 04:29:59 (16239): Guest Log: 00:00:00.081309 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2018-06-19 04:29:59 (16239): Guest Log: Mounting BOINC shared/...
2018-06-19 04:29:59 (16239): Guest Log: -------------------
2018-06-19 04:29:59 (16239): Guest Log: Tue Jun 19 10:29:58 UTC 2018
2018-06-19 04:30:03 (16239): Guest Log: 00:00:05.082476 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2018-06-19 04:30:04 (16239): Guest Log: Tue Jun 19 10:30:03 UTC 2018
2018-06-19 04:30:04 (16239): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2018-06-19 04:30:04 (16239): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2018-06-19 04:30:04 (16239): Guest Log:     inet 127.0.0.1/8 scope host lo
2018-06-19 04:30:04 (16239): Guest Log:        valid_lft forever preferred_lft forever
2018-06-19 04:30:04 (16239): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2018-06-19 04:30:04 (16239): Guest Log:     link/ether 7e:cc:b1:ff:c9:1b brd ff:ff:ff:ff:ff:ff
2018-06-19 04:30:04 (16239): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2018-06-19 04:30:04 (16239): Guest Log:     link/ether 08:00:27:85:51:eb brd ff:ff:ff:ff:ff:ff
2018-06-19 04:30:04 (16239): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2018-06-19 04:30:04 (16239): Guest Log: -------------------
2018-06-19 04:30:04 (16239): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2018-06-19 04:30:04 (16239): Guest Log: Waiting for Docker daemon to start...
2018-06-19 04:30:05 (16239): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2018-06-19 04:30:05 (16239): Guest Log: Running boinc_app...
2018-06-19 04:30:05 (16239): Guest Log: Importing Docker image from BOINC...
2018-06-19 04:30:05 (16239): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-06-19 04:30:05 (16239): Guest Log: tmpfs                     2.6G    164.2M      2.5G   6% /
2018-06-19 04:30:05 (16239): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-06-19 04:30:05 (16239): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-06-19 04:30:05 (16239): Guest Log: tmpfs                     2.6G    164.2M      2.5G   6% /var/lib/docker/aufs
2018-06-19 04:30:09 (16239): Guest Log: 00:00:10.084138 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2018-06-19 04:30:14 (16239): Guest Log: doing docker load...
2018-06-19 04:30:31 (16239): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-06-19 04:30:31 (16239): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /
2018-06-19 04:30:31 (16239): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-06-19 04:30:31 (16239): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-06-19 04:30:31 (16239): Guest Log: shared                  166.2G     40.0G    126.2G  24% /root/shared
2018-06-19 04:30:31 (16239): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /var/lib/docker/aufs
2018-06-19 04:30:31 (16239): Guest Log:               total        used        free      shared  buff/cache   available
2018-06-19 04:30:31 (16239): Guest Log: Mem:           3007          50        2255         663         701        2255
2018-06-19 04:30:31 (16239): Guest Log: Building apps directory...
2018-06-19 04:30:33 (16239): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2018-06-19 04:30:41 (16239): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077_links.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2018-06-19 04:30:41 (16239): Guest Log: mv /root/shared/appsSource/rappture /root/shared/apps/share64/debian7/environ.d
2018-06-19 04:31:49 (16239): Guest Log: Prerun diagnostics...
2018-06-19 04:31:50 (16239): Guest Log: REPOSITORY                    TAG                 IMAGE ID            CREATED             SIZE
2018-06-19 04:31:50 (16239): Guest Log: nanohub_apps_share64_matlab   4                   32c863520615        6 months ago        488.2 MB
2018-06-19 04:31:50 (16239): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2018-06-19 04:31:50 (16239): Guest Log: 499.0M	/var/lib/docker
2018-06-19 04:31:50 (16239): Guest Log:               total        used        free      shared  buff/cache   available
2018-06-19 04:31:50 (16239): Guest Log: Mem:           3007          52        2241         663         713        2251
2018-06-19 04:31:50 (16239): Guest Log: Swap:           700           0         700
2018-06-19 04:31:50 (16239): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-06-19 04:31:50 (16239): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /
2018-06-19 04:31:50 (16239): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-06-19 04:31:50 (16239): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-06-19 04:31:50 (16239): Guest Log: shared                  166.2G     38.8G    127.4G  23% /root/shared
2018-06-19 04:31:50 (16239): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /var/lib/docker/aufs
2018-06-19 04:31:50 (16239): Guest Log: Running... 
2018-06-19 04:31:50 (16239): Guest Log: 06674650_01.boinc
2018-06-19 04:31:50 (16239): Guest Log: 06674650_01.sh
2018-06-19 06:09:36 (16239): Status Report: Elapsed Time: '6000.469475'
2018-06-19 06:09:36 (16239): Status Report: CPU Time: '5736.190000'
2018-06-19 07:49:38 (16239): Status Report: Elapsed Time: '12000.625493'
2018-06-19 07:49:38 (16239): Status Report: CPU Time: '11457.520000'
2018-06-19 08:37:25 (16239): Guest Log: boinc_app exited (0)
2018-06-19 08:37:25 (16239): Guest Log: Saving results...
2018-06-19 08:37:25 (16239): Guest Log: 06674650_01_output.tar.gz
2018-06-19 08:37:25 (16239): VM Completion File Detected.
2018-06-19 08:37:25 (16239): Powering off VM.
2018-06-19 08:37:27 (16239): Successfully stopped VM.
2018-06-19 08:37:27 (16239): Deregistering VM. (boinc_c7cc7301300349ee, slot#14)
2018-06-19 08:37:28 (16239): Removing network bandwidth throttle group from VM.
2018-06-19 08:37:28 (16239): Removing storage controller(s) from VM.
2018-06-19 08:37:29 (16239): Removing VM from VirtualBox.
2018-06-19 08:37:29 (16239): Removing virtual ISO 9660 disk from VirtualBox.
08:37:34 (16239): called boinc_finish(0)

</stderr_txt>
]]>


©2024 COPYRIGHT 2017-2018 NCN