Task 266073

Name	06674652_30_4
Workunit	167604
Created	19 Jun 2018, 14:00:49 UTC
Sent	19 Jun 2018, 14:00:57 UTC
Report deadline	19 Jun 2018, 22:00:57 UTC
Received	20 Jun 2018, 6:17:15 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	219
Run time	10 hours 25 min 56 sec
CPU time	8 hours 5 min 13 sec
Validate state	Valid
Credit	53.63
Device peak FLOPS	2.23 GFLOPS
Application version	boinc2docker v1.11 (vbox64_mt) x86_64-pc-linux-gnu
Peak working set size	3.05 GB
Peak swap size	5.08 GB
Peak disk usage	1.24 GB
Stderr output

<core_client_version>7.4.23</core_client_version>
<![CDATA[
<stderr_txt>
2018-06-19 15:49:38 (21625): vboxwrapper (7.7.26197): starting
2018-06-19 15:49:39 (21625): Feature: Checkpoint interval offset (563 seconds)
2018-06-19 15:49:39 (21625): Detected: VirtualBox VboxManage Interface (Version: 5.1.8)
2018-06-19 15:49:39 (21625): Detected: Minimum checkpoint interval (600.000000 seconds)
2018-06-19 15:49:39 (21625): Create VM. (boinc_d4e34869f337c9b2, slot#8)
2018-06-19 15:49:39 (21625): Updating drive controller type and model for desired configuration.
2018-06-19 15:49:41 (21625): Setting Memory Size for VM. (3072MB)
2018-06-19 15:49:41 (21625): Setting CPU Count for VM. (1)
2018-06-19 15:49:42 (21625): Setting Chipset Options for VM.
2018-06-19 15:49:42 (21625): Setting Boot Options for VM.
2018-06-19 15:49:42 (21625): Setting Network Configuration for NAT.
2018-06-19 15:49:42 (21625): Enabling VM Network Access.
2018-06-19 15:49:42 (21625): Disabling USB Support for VM.
2018-06-19 15:49:42 (21625): Disabling COM Port Support for VM.
2018-06-19 15:49:42 (21625): Disabling LPT Port Support for VM.
2018-06-19 15:49:42 (21625): Disabling Audio Support for VM.
2018-06-19 15:49:42 (21625): Disabling Clipboard Support for VM.
2018-06-19 15:49:42 (21625): Disabling Drag and Drop Support for VM.
2018-06-19 15:49:42 (21625): Adding storage controller(s) to VM.
2018-06-19 15:49:43 (21625): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2018-06-19 15:49:43 (21625): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2018-06-19 15:49:43 (21625): Enabling shared directory for VM.
2018-06-19 15:49:43 (21625): Starting VM. (boinc_d4e34869f337c9b2, slot#8)
2018-06-19 15:49:45 (21625): Successfully started VM. (PID = '22192')
2018-06-19 15:49:45 (21625): Reporting VM Process ID to BOINC.
2018-06-19 15:49:45 (21625): Guest Log: BIOS: VirtualBox 5.1.8
2018-06-19 15:49:45 (21625): VM state change detected. (old = 'poweroff', new = 'running')
2018-06-19 15:49:46 (21625): Preference change detected
2018-06-19 15:49:46 (21625): Setting CPU throttle for VM. (75%)
2018-06-19 15:49:46 (21625): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2018-06-19 15:49:48 (21625): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2018-06-19 15:49:48 (21625): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2018-06-19 15:49:48 (21625): Guest Log: BIOS: Boot from Hard Disk 0 failed
2018-06-19 15:49:48 (21625): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2018-06-19 15:49:48 (21625): Guest Log: BIOS: Booting from CD-ROM...
2018-06-19 15:49:50 (21625): Guest Log: BIOS: KBD: unsupported int 16h function 03
2018-06-19 15:49:50 (21625): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2018-06-19 15:50:11 (21625): Guest Log: net.ipv4.ip_forward = 1
2018-06-19 15:50:11 (21625): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2018-06-19 15:50:11 (21625): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2018-06-19 15:50:11 (21625): Guest Log: sysctl: "cannot stat %s" is an unknown key
2018-06-19 15:50:11 (21625): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2018-06-19 15:50:11 (21625): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2018-06-19 15:50:11 (21625): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2018-06-19 15:50:11 (21625): Guest Log: Segmentation fault
2018-06-19 15:50:12 (21625): Guest Log: automount ...
2018-06-19 15:50:12 (21625): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2018-06-19 15:50:13 (21625): Guest Log: automount over.
2018-06-19 15:50:13 (21625): Guest Log: [1;32mSetting hostname to [1;35mboot2docker[0;39m [1;32mDone.[0;39m
2018-06-19 15:50:13 (21625): Guest Log: Tue Jun 19 15:50:11 UTC 2018 dhcp -------------------------------
2018-06-19 15:50:18 (21625): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2018-06-19 15:50:18 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1285)
2018-06-19 15:50:18 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1286)
2018-06-19 15:50:18 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1291)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1293)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1294)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1295)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6 (1296)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6/event5 (1297)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1298)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1299)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1300)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1301)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1302)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1303)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1304)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1305)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1306)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1307)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1308)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1309)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1310)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1311)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1312)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1313)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1314)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1315)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1316)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1317)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1318)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1319)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1320)
2018-06-19 15:50:19 (21625): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1321)
2018-06-19 15:50:20 (21625): Guest Log: Tue Jun 19 15:50:17 UTC 2018 dhcp -------------------------------
2018-06-19 15:50:20 (21625): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2018-06-19 15:50:20 (21625): Guest Log: 00:00:00.000764 main     Log opened 2018-06-19T15:50:18.531633000Z
2018-06-19 15:50:20 (21625): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2018-06-19 15:50:20 (21625): Guest Log: 00:00:00.000764 main     Log opened 2018-06-19T15:50:18.531633000Z
2018-06-19 15:50:20 (21625): Guest Log: 00:00:00.007078 main     OS Product: Linux
2018-06-19 15:50:20 (21625): Guest Log: 00:00:00.007166 main     OS Release: 4.1.19-boot2docker
2018-06-19 15:50:20 (21625): Guest Log: 00:00:00.007308 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2018-06-19 15:50:20 (21625): Guest Log: 00:00:00.007383 main     Executable: /sbin/VBoxService
2018-06-19 15:50:20 (21625): Guest Log: 00:00:00.007385 main     Process ID: 743
2018-06-19 15:50:20 (21625): Guest Log: 00:00:00.007386 main     Package type: LINUX_64BITS_GENERIC
2018-06-19 15:50:20 (21625): Guest Log: 00:00:00.007078 main     OS Product: Linux
2018-06-19 15:50:20 (21625): Guest Log: 00:00:00.007166 main     OS Release: 4.1.19-boot2docker
2018-06-19 15:50:20 (21625): Guest Log: 00:00:00.007308 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2018-06-19 15:50:20 (21625): Guest Log: 00:00:00.007383 main     Executable: /sbin/VBoxService
2018-06-19 15:50:20 (21625): Guest Log: 00:00:00.019654 main     5.0.16 r105871 started. Verbose level = 0
2018-06-19 15:50:20 (21625): Guest Log: 00:00:00.007385 main     Process ID: 743
2018-06-19 15:50:20 (21625): Guest Log: 00:00:00.071907 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2018-06-19 15:50:20 (21625): Guest Log: 00:00:00.072370 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2018-06-19 15:50:20 (21625): Guest Log: 00:00:00.007386 main     Package type: LINUX_64BITS_GENERIC
2018-06-19 15:50:20 (21625): Guest Log: 00:00:00.019654 main     5.0.16 r105871 started. Verbose level = 0
2018-06-19 15:50:21 (21625): Guest Log: Mounting BOINC shared/...
2018-06-19 15:50:21 (21625): Guest Log: -------------------
2018-06-19 15:50:21 (21625): Guest Log: Tue Jun 19 19:50:21 UTC 2018
2018-06-19 15:50:25 (21625): Guest Log: 00:00:05.077597 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2018-06-19 15:50:26 (21625): Guest Log: Tue Jun 19 19:50:26 UTC 2018
2018-06-19 15:50:26 (21625): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2018-06-19 15:50:26 (21625): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2018-06-19 15:50:26 (21625): Guest Log:     inet 127.0.0.1/8 scope host lo
2018-06-19 15:50:26 (21625): Guest Log:        valid_lft forever preferred_lft forever
2018-06-19 15:50:26 (21625): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2018-06-19 15:50:26 (21625): Guest Log:     link/ether 9e:1d:bc:d7:07:c5 brd ff:ff:ff:ff:ff:ff
2018-06-19 15:50:26 (21625): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2018-06-19 15:50:26 (21625): Guest Log:     link/ether 08:00:27:0b:42:be brd ff:ff:ff:ff:ff:ff
2018-06-19 15:50:26 (21625): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2018-06-19 15:50:26 (21625): Guest Log:        valid_lft forever preferred_lft forever
2018-06-19 15:50:26 (21625): Guest Log: -------------------
2018-06-19 15:50:26 (21625): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2018-06-19 15:50:26 (21625): Guest Log: Waiting for Docker daemon to start...
2018-06-19 15:50:29 (21625): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2018-06-19 15:50:29 (21625): Guest Log: Running boinc_app...
2018-06-19 15:50:29 (21625): Guest Log: Importing Docker image from BOINC...
2018-06-19 15:50:29 (21625): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-06-19 15:50:29 (21625): Guest Log: tmpfs                     2.6G    164.1M      2.5G   6% /
2018-06-19 15:50:29 (21625): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-06-19 15:50:29 (21625): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-06-19 15:50:29 (21625): Guest Log: shared                  916.3G     78.8G    837.5G   9% /root/shared
2018-06-19 15:50:29 (21625): Guest Log: tmpfs                     2.6G    164.1M      2.5G   6% /var/lib/docker/aufs
2018-06-19 15:50:30 (21625): Guest Log: 00:00:10.079421 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2018-06-19 15:50:49 (21625): Guest Log: doing docker load...
2018-06-19 15:51:31 (21625): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-06-19 15:51:31 (21625): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /
2018-06-19 15:51:31 (21625): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-06-19 15:51:31 (21625): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-06-19 15:51:31 (21625): Guest Log: shared                  916.3G     78.6G    837.7G   9% /root/shared
2018-06-19 15:51:31 (21625): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /var/lib/docker/aufs
2018-06-19 15:51:31 (21625): Guest Log:               total        used        free      shared  buff/cache   available
2018-06-19 15:51:31 (21625): Guest Log: Mem:           3007          51        2253         663         701        2254
2018-06-19 15:51:31 (21625): Guest Log: Swap:           703           0         703
2018-06-19 15:51:31 (21625): Guest Log: Building apps directory...
2018-06-19 15:51:43 (21625): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2018-06-19 15:51:52 (21625): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077_links.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2018-06-19 15:51:52 (21625): Guest Log: mv /root/shared/appsSource/rappture /root/shared/apps/share64/debian7/environ.d
2018-06-19 15:55:08 (21625): Guest Log: Prerun diagnostics...
2018-06-19 15:55:08 (21625): Guest Log: REPOSITORY                    TAG                 IMAGE ID            CREATED             SIZE
2018-06-19 15:55:08 (21625): Guest Log: nanohub_apps_share64_matlab   4                   32c863520615        6 months ago        488.2 MB
2018-06-19 15:55:08 (21625): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2018-06-19 15:55:08 (21625): Guest Log: 499.0M	/var/lib/docker
2018-06-19 15:55:08 (21625): Guest Log:               total        used        free      shared  buff/cache   available
2018-06-19 15:55:08 (21625): Guest Log: Mem:           3007          52        2241         663         713        2251
2018-06-19 15:55:08 (21625): Guest Log: Swap:           703           0         703
2018-06-19 15:55:08 (21625): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-06-19 15:55:08 (21625): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /
2018-06-19 15:55:08 (21625): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-06-19 15:55:08 (21625): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-06-19 15:55:08 (21625): Guest Log: shared                  916.3G     79.1G    837.2G   9% /root/shared
2018-06-19 15:55:08 (21625): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /var/lib/docker/aufs
2018-06-19 15:55:08 (21625): Guest Log: Running... 
2018-06-19 15:55:08 (21625): Guest Log: 06674652_30.boinc
2018-06-19 15:55:08 (21625): Guest Log: 06674652_30.sh
2018-06-19 17:28:51 (21625): Status Report: Elapsed Time: '6000.911743'
2018-06-19 17:28:51 (21625): Status Report: CPU Time: '4511.230000'
2018-06-19 19:07:53 (21625): Status Report: Elapsed Time: '12001.566420'
2018-06-19 19:07:53 (21625): Status Report: CPU Time: '9127.470000'
2018-06-19 20:46:55 (21625): Status Report: Elapsed Time: '18001.566420'
2018-06-19 20:46:55 (21625): Status Report: CPU Time: '13755.840000'
2018-06-19 22:25:56 (21625): Status Report: Elapsed Time: '24001.566420'
2018-06-19 22:25:56 (21625): Status Report: CPU Time: '18379.040000'
2018-06-20 00:04:57 (21625): Status Report: Elapsed Time: '30001.566420'
2018-06-20 00:04:57 (21625): Status Report: CPU Time: '22983.880000'
2018-06-20 01:43:59 (21625): Status Report: Elapsed Time: '36001.848830'
2018-06-20 01:43:59 (21625): Status Report: CPU Time: '27588.780000'
2018-06-20 02:16:57 (21625): Guest Log: boinc_app exited (0)
2018-06-20 02:16:57 (21625): Guest Log: Saving results...
2018-06-20 02:16:57 (21625): Guest Log: 06674652_30_output.tar.gz
2018-06-20 02:16:57 (21625): VM Completion File Detected.
2018-06-20 02:16:57 (21625): Powering off VM.
2018-06-20 02:16:59 (21625): Successfully stopped VM.
2018-06-20 02:16:59 (21625): Deregistering VM. (boinc_d4e34869f337c9b2, slot#8)
2018-06-20 02:17:00 (21625): Removing network bandwidth throttle group from VM.
2018-06-20 02:17:00 (21625): Removing storage controller(s) from VM.
2018-06-20 02:17:00 (21625): Removing VM from VirtualBox.
2018-06-20 02:17:00 (21625): Removing virtual ISO 9660 disk from VirtualBox.
02:17:05 (21625): called boinc_finish(0)

</stderr_txt>
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