Task 291779
| Name | 06910368_05_2 |
| Workunit | 184854 |
| Created | 14 Nov 2018, 21:17:51 UTC |
| Sent | 14 Nov 2018, 21:18:16 UTC |
| Report deadline | 15 Nov 2018, 5:18:16 UTC |
| Received | 15 Nov 2018, 2:44:30 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 501 |
| Run time | 3 min 3 sec |
| CPU time | 1 min |
| Validate state | Valid |
| Credit | 0.44 |
| Device peak FLOPS | 4.13 GFLOPS |
| Application version | boinc2docker v1.11 (vbox64_mt) x86_64-pc-linux-gnu |
| Peak working set size | 107.72 MB |
| Peak swap size | 4.06 GB |
| Peak disk usage | 290.23 MB |
Stderr output
<core_client_version>7.10.2</core_client_version>
<![CDATA[
<stderr_txt>
2018-11-15 03:41:16 (20542): vboxwrapper (7.7.26197): starting
2018-11-15 03:41:17 (20542): Feature: Checkpoint interval offset (490 seconds)
2018-11-15 03:41:17 (20542): Detected: VirtualBox VboxManage Interface (Version: 5.2.22)
2018-11-15 03:41:17 (20542): Detected: Minimum checkpoint interval (600.000000 seconds)
2018-11-15 03:41:18 (20542): Create VM. (boinc_6856d738e11260d7, slot#1)
2018-11-15 03:41:18 (20542): Updating drive controller type and model for desired configuration.
2018-11-15 03:41:19 (20542): Setting Memory Size for VM. (3072MB)
2018-11-15 03:41:20 (20542): Setting CPU Count for VM. (1)
2018-11-15 03:41:20 (20542): Setting Chipset Options for VM.
2018-11-15 03:41:21 (20542): Setting Boot Options for VM.
2018-11-15 03:41:21 (20542): Setting Network Configuration for NAT.
2018-11-15 03:41:22 (20542): Enabling VM Network Access.
2018-11-15 03:41:22 (20542): Disabling USB Support for VM.
2018-11-15 03:41:23 (20542): Disabling COM Port Support for VM.
2018-11-15 03:41:24 (20542): Disabling LPT Port Support for VM.
2018-11-15 03:41:24 (20542): Disabling Audio Support for VM.
2018-11-15 03:41:24 (20542): Disabling Clipboard Support for VM.
2018-11-15 03:41:25 (20542): Disabling Drag and Drop Support for VM.
2018-11-15 03:41:26 (20542): Adding storage controller(s) to VM.
2018-11-15 03:41:26 (20542): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2018-11-15 03:41:27 (20542): Adding VirtualBox Guest Additions to VM.
2018-11-15 03:41:28 (20542): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2018-11-15 03:41:28 (20542): Enabling shared directory for VM.
2018-11-15 03:41:31 (20542): Starting VM. (boinc_6856d738e11260d7, slot#1)
2018-11-15 03:41:35 (20542): Successfully started VM. (PID = '21614')
2018-11-15 03:41:35 (20542): Reporting VM Process ID to BOINC.
2018-11-15 03:41:38 (20542): Guest Log: BIOS: VirtualBox 5.2.22
2018-11-15 03:41:38 (20542): Guest Log: CPUID EDX: 0x078bfbff
2018-11-15 03:41:38 (20542): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2018-11-15 03:41:38 (20542): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2018-11-15 03:41:38 (20542): Guest Log: BIOS: Boot from Hard Disk 0 failed
2018-11-15 03:41:38 (20542): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2018-11-15 03:41:38 (20542): Guest Log: BIOS: Booting from CD-ROM...
2018-11-15 03:41:39 (20542): VM state change detected. (old = 'poweroff', new = 'running')
2018-11-15 03:41:41 (20542): Preference change detected
2018-11-15 03:41:41 (20542): Setting CPU throttle for VM. (100%)
2018-11-15 03:41:41 (20542): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2018-11-15 03:41:44 (20542): Guest Log: BIOS: KBD: unsupported int 16h function 03
2018-11-15 03:41:44 (20542): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000
2018-11-15 03:42:07 (20542): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2018-11-15 03:42:07 (20542): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2018-11-15 03:42:07 (20542): Guest Log: net.ipv4.ip_forward = 1
2018-11-15 03:42:07 (20542): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2018-11-15 03:42:07 (20542): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2018-11-15 03:42:07 (20542): Guest Log: sysctl: "cannot stat %s" is an unknown key
2018-11-15 03:42:07 (20542): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2018-11-15 03:42:07 (20542): Guest Log: Segmentation fault
2018-11-15 03:42:07 (20542): Guest Log: automount ...
2018-11-15 03:42:07 (20542): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2018-11-15 03:42:07 (20542): Guest Log: automount over.
2018-11-15 03:42:07 (20542): Guest Log: [1;32mSetting hostname to [1;35mboot2docker[0;39m [1;32mDone.[0;39m
2018-11-15 03:42:07 (20542): Guest Log: Thu Nov 15 03:42:04 UTC 2018 dhcp -------------------------------
2018-11-15 03:42:12 (20542): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1079)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00 (1304)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXCPU:00 (1305)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1306)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1307)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1308)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1309)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1310)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1311)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1312)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1313)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1314)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1315)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1316)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1317)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6 (1318)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6/event5 (1319)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1320)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1321)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1322)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1323)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1324)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1325)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1326)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1327)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1328)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1329)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1330)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1331)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1332)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1333)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1334)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1335)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1336)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1337)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1338)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1339)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1340)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1341)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1342)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1343)
2018-11-15 03:42:12 (20542): Guest Log: /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1344)
2018-11-15 03:42:15 (20542): Guest Log: Thu Nov 15 03:42:11 UTC 2018 dhcp -------------------------------
2018-11-15 03:42:15 (20542): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar 4 2016 17:38:55) release log
2018-11-15 03:42:15 (20542): Guest Log: 00:00:00.000107 main Log opened 2018-11-15T03:42:11.163103000Z
2018-11-15 03:42:15 (20542): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar 4 2016 17:38:55) release log
2018-11-15 03:42:15 (20542): Guest Log: 00:00:00.000107 main Log opened 2018-11-15T03:42:11.163103000Z
2018-11-15 03:42:15 (20542): Guest Log: 00:00:00.007193 main OS Product: Linux
2018-11-15 03:42:15 (20542): Guest Log: 00:00:00.007266 main OS Release: 4.1.19-boot2docker
2018-11-15 03:42:15 (20542): Guest Log: 00:00:00.007378 main OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2018-11-15 03:42:15 (20542): Guest Log: 00:00:00.007413 main Executable: /sbin/VBoxService
2018-11-15 03:42:15 (20542): Guest Log: 00:00:00.007414 main Process ID: 932
2018-11-15 03:42:15 (20542): Guest Log: 00:00:00.007415 main Package type: LINUX_64BITS_GENERIC
2018-11-15 03:42:15 (20542): Guest Log: 00:00:00.007193 main OS Product: Linux
2018-11-15 03:42:15 (20542): Guest Log: 00:00:00.007266 main OS Release: 4.1.19-boot2docker
2018-11-15 03:42:15 (20542): Guest Log: 00:00:00.007378 main OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2018-11-15 03:42:15 (20542): Guest Log: 00:00:00.007413 main Executable: /sbin/VBoxService
2018-11-15 03:42:15 (20542): Guest Log: 00:00:00.007414 main Process ID: 932
2018-11-15 03:42:15 (20542): Guest Log: 00:00:00.007415 main Package type: LINUX_64BITS_GENERIC
2018-11-15 03:42:15 (20542): Guest Log: 00:00:00.035312 main 5.0.16 r105871 started. Verbose level = 0
2018-11-15 03:42:15 (20542): Guest Log: 00:00:00.035312 main 5.0.16 r105871 started. Verbose level = 0
2018-11-15 03:42:15 (20542): Guest Log: 00:00:00.113310 vminfo rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2018-11-15 03:42:15 (20542): Guest Log: 00:00:00.113402 vminfo Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2018-11-15 03:42:15 (20542): Guest Log: Mounting BOINC shared/...
2018-11-15 03:42:15 (20542): Guest Log: -------------------
2018-11-15 03:42:15 (20542): Guest Log: Thu Nov 15 02:42:13 UTC 2018
2018-11-15 03:42:20 (20542): Guest Log: 00:00:05.122812 vminfo Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2018-11-15 03:42:20 (20542): Guest Log: Thu Nov 15 02:42:18 UTC 2018
2018-11-15 03:42:20 (20542): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default
2018-11-15 03:42:20 (20542): Guest Log: link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2018-11-15 03:42:20 (20542): Guest Log: inet 127.0.0.1/8 scope host lo
2018-11-15 03:42:20 (20542): Guest Log: valid_lft forever preferred_lft forever
2018-11-15 03:42:20 (20542): Guest Log: inet6 ::1/128 scope host
2018-11-15 03:42:20 (20542): Guest Log: valid_lft forever preferred_lft forever
2018-11-15 03:42:20 (20542): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default
2018-11-15 03:42:20 (20542): Guest Log: link/ether 6a:ea:47:9c:ba:27 brd ff:ff:ff:ff:ff:ff
2018-11-15 03:42:20 (20542): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2018-11-15 03:42:20 (20542): Guest Log: link/ether 08:00:27:16:67:53 brd ff:ff:ff:ff:ff:ff
2018-11-15 03:42:20 (20542): Guest Log: inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2018-11-15 03:42:20 (20542): Guest Log: valid_lft forever preferred_lft forever
2018-11-15 03:42:20 (20542): Guest Log: inet6 fe80::a00:27ff:fe16:6753/64 scope link
2018-11-15 03:42:20 (20542): Guest Log: valid_lft forever preferred_lft forever
2018-11-15 03:42:20 (20542): Guest Log: -------------------
2018-11-15 03:42:20 (20542): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2018-11-15 03:42:20 (20542): Guest Log: Waiting for Docker daemon to start...
2018-11-15 03:42:20 (20542): Guest Log: REPOSITORY TAG IMAGE ID CREATED SIZE
2018-11-15 03:42:20 (20542): Guest Log: Running boinc_app...
2018-11-15 03:42:20 (20542): Guest Log: Importing Docker image from BOINC...
2018-11-15 03:42:20 (20542): Guest Log: Filesystem Size Used Available Use% Mounted on
2018-11-15 03:42:20 (20542): Guest Log: tmpfs 2.6G 164.2M 2.5G 6% /
2018-11-15 03:42:20 (20542): Guest Log: tmpfs 1.5G 0 1.5G 0% /dev/shm
2018-11-15 03:42:20 (20542): Guest Log: cgroup 1.5G 0 1.5G 0% /sys/fs/cgroup
2018-11-15 03:42:20 (20542): Guest Log: shared 437.2G 35.6G 401.6G 8% /root/shared
2018-11-15 03:42:20 (20542): Guest Log: tmpfs 2.6G 164.2M 2.5G 6% /var/lib/docker/aufs
2018-11-15 03:42:25 (20542): Guest Log: 00:00:10.126173 vminfo Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2018-11-15 03:42:46 (20542): Guest Log: doing docker load...
2018-11-15 03:43:13 (20542): Guest Log: Filesystem Size Used Available Use% Mounted on
2018-11-15 03:43:13 (20542): Guest Log: tmpfs 2.6G 803.4M 1.9G 30% /
2018-11-15 03:43:13 (20542): Guest Log: tmpfs 1.5G 0 1.5G 0% /dev/shm
2018-11-15 03:43:13 (20542): Guest Log: cgroup 1.5G 0 1.5G 0% /sys/fs/cgroup
2018-11-15 03:43:13 (20542): Guest Log: shared 437.2G 35.4G 401.8G 8% /root/shared
2018-11-15 03:43:13 (20542): Guest Log: tmpfs 2.6G 803.4M 1.9G 30% /var/lib/docker/aufs
2018-11-15 03:43:13 (20542): Guest Log: total used free shared buff/cache available
2018-11-15 03:43:13 (20542): Guest Log: Mem: 3007 53 2104 803 849 2107
2018-11-15 03:43:13 (20542): Guest Log: Swap: 701 0 701
2018-11-15 03:43:13 (20542): Guest Log: Building apps directory...
2018-11-15 03:43:32 (20542): Guest Log: Prerun diagnostics...
2018-11-15 03:43:32 (20542): Guest Log: REPOSITORY TAG IMAGE ID CREATED SIZE
2018-11-15 03:43:32 (20542): Guest Log: nanohub_apps_scipy 4 1c97f9c9808f 11 months ago 627.2 MB
2018-11-15 03:43:32 (20542): Guest Log: CONTAINER ID IMAGE COMMAND CREATED STATUS PORTS NAMES
2018-11-15 03:43:32 (20542): Guest Log: 639.3M /var/lib/docker
2018-11-15 03:43:32 (20542): Guest Log: total used free shared buff/cache available
2018-11-15 03:43:32 (20542): Guest Log: Mem: 3007 55 2100 803 851 2105
2018-11-15 03:43:32 (20542): Guest Log: Swap: 701 0 701
2018-11-15 03:43:32 (20542): Guest Log: Filesystem Size Used Available Use% Mounted on
2018-11-15 03:43:32 (20542): Guest Log: tmpfs 2.6G 803.4M 1.9G 30% /
2018-11-15 03:43:32 (20542): Guest Log: tmpfs 1.5G 0 1.5G 0% /dev/shm
2018-11-15 03:43:32 (20542): Guest Log: cgroup 1.5G 0 1.5G 0% /sys/fs/cgroup
2018-11-15 03:43:32 (20542): Guest Log: shared 437.2G 35.5G 401.7G 8% /root/shared
2018-11-15 03:43:32 (20542): Guest Log: tmpfs 2.6G 803.4M 1.9G 30% /var/lib/docker/aufs
2018-11-15 03:43:32 (20542): Guest Log: Running...
2018-11-15 03:43:32 (20542): Guest Log: 06910368_05.boinc
2018-11-15 03:43:32 (20542): Guest Log: 06910368_05.sh
2018-11-15 03:44:06 (20542): Guest Log: boinc_app exited (0)
2018-11-15 03:44:06 (20542): Guest Log: Saving results...
2018-11-15 03:44:06 (20542): Guest Log: 06910368_05_output.tar.gz
2018-11-15 03:44:06 (20542): VM Completion File Detected.
2018-11-15 03:44:06 (20542): Powering off VM.
2018-11-15 03:44:10 (20542): Successfully stopped VM.
2018-11-15 03:44:10 (20542): Deregistering VM. (boinc_6856d738e11260d7, slot#1)
2018-11-15 03:44:10 (20542): Removing network bandwidth throttle group from VM.
2018-11-15 03:44:11 (20542): Removing storage controller(s) from VM.
2018-11-15 03:44:11 (20542): Removing VM from VirtualBox.
2018-11-15 03:44:11 (20542): Removing virtual ISO 9660 disk from VirtualBox.
03:44:17 (20542): called boinc_finish(0)
</stderr_txt>
]]>
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