Task 309518

Name 06921568_007_3
Workunit 192077
Created 20 Nov 2018, 12:49:10 UTC
Sent 20 Nov 2018, 12:49:14 UTC
Report deadline 20 Nov 2018, 20:49:14 UTC
Received 20 Nov 2018, 18:13:38 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 519
Run time 10 min 41 sec
CPU time 10 min 6 sec
Validate state Valid
Credit 3.51
Device peak FLOPS 4.22 GFLOPS
Application version boinc2docker v1.11 (vbox64_mt)
x86_64-apple-darwin
Peak working set size 1.87 GB
Peak swap size 10.21 GB
Peak disk usage 2.59 GB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2018-11-20 19:02:33 (58206): vboxwrapper (7.7.26199): starting
2018-11-20 19:02:33 (58206): Feature: Checkpoint interval offset (273 seconds)
2018-11-20 19:02:33 (58206): Detected: VirtualBox VboxManage Interface (Version: 5.2.22)
2018-11-20 19:02:33 (58206): Detected: Sandbox Configuration Enabled
2018-11-20 19:02:33 (58206): Detected: Minimum checkpoint interval (600.000000 seconds)
2018-11-20 19:02:34 (58206): Create VM. (boinc_d8c2a1258679cdb9, slot#16)
2018-11-20 19:02:34 (58206): Updating drive controller type and model for desired configuration.
2018-11-20 19:02:34 (58206): Setting Memory Size for VM. (3072MB)
2018-11-20 19:02:34 (58206): Setting CPU Count for VM. (1)
2018-11-20 19:02:34 (58206): Setting Chipset Options for VM.
2018-11-20 19:02:34 (58206): Setting Boot Options for VM.
2018-11-20 19:02:34 (58206): Setting Network Configuration for NAT.
2018-11-20 19:02:34 (58206): Enabling VM Network Access.
2018-11-20 19:02:34 (58206): Disabling USB Support for VM.
2018-11-20 19:02:34 (58206): Disabling COM Port Support for VM.
2018-11-20 19:02:34 (58206): Disabling Audio Support for VM.
2018-11-20 19:02:34 (58206): Disabling Clipboard Support for VM.
2018-11-20 19:02:34 (58206): Disabling Drag and Drop Support for VM.
2018-11-20 19:02:35 (58206): Adding storage controller(s) to VM.
2018-11-20 19:02:35 (58206): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2018-11-20 19:02:35 (58206): Adding VirtualBox Guest Additions to VM.
2018-11-20 19:02:35 (58206): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2018-11-20 19:02:35 (58206): Enabling shared directory for VM.
2018-11-20 19:02:35 (58206): Starting VM. (boinc_d8c2a1258679cdb9, slot#16)
2018-11-20 19:02:36 (58206): Successfully started VM. (PID = '58292')
2018-11-20 19:02:36 (58206): Reporting VM Process ID to BOINC.
2018-11-20 19:02:37 (58206): Guest Log: BIOS: VirtualBox 5.2.22
2018-11-20 19:02:37 (58206): Guest Log: CPUID EDX: 0x078bfbff
2018-11-20 19:02:37 (58206): VM state change detected. (old = 'poweroff', new = 'running')
2018-11-20 19:02:37 (58206): Preference change detected
2018-11-20 19:02:37 (58206): Setting CPU throttle for VM. (100%)
2018-11-20 19:02:37 (58206): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2018-11-20 19:02:39 (58206): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2018-11-20 19:02:39 (58206): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2018-11-20 19:02:39 (58206): Guest Log: BIOS: Boot from Hard Disk 0 failed
2018-11-20 19:02:39 (58206): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2018-11-20 19:02:39 (58206): Guest Log: BIOS: Booting from CD-ROM...
2018-11-20 19:02:40 (58206): Guest Log: BIOS: KBD: unsupported int 16h function 03
2018-11-20 19:02:40 (58206): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2018-11-20 19:02:54 (58206): Guest Log: net.ipv4.ip_forward = 1
2018-11-20 19:02:54 (58206): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2018-11-20 19:02:54 (58206): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2018-11-20 19:02:54 (58206): Guest Log: sysctl: "cannot stat %s" is an unknown key
2018-11-20 19:02:54 (58206): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2018-11-20 19:02:54 (58206): Guest Log: Segmentation fault
2018-11-20 19:02:54 (58206): Guest Log: automount ...
2018-11-20 19:02:54 (58206): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2018-11-20 19:02:54 (58206): Guest Log: automount over.
2018-11-20 19:02:54 (58206): Guest Log: Setting hostname to boot2docker Done.
2018-11-20 19:02:54 (58206): Guest Log: Tue Nov 20 19:02:51 UTC 2018 dhcp -------------------------------
2018-11-20 19:02:54 (58206): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2018-11-20 19:02:54 (58206): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2018-11-20 19:02:59 (58206): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1067)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00 (1287)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1288)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1289)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1290)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1291)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1292)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1293)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1294)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1295)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1296)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1297)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1298)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1299)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1300)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6 (1301)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6/event5 (1302)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1303)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1304)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1305)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1306)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1307)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1308)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1309)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1310)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1311)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1312)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1313)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1314)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1315)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1316)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1317)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1318)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1319)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1320)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1321)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1322)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1323)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1324)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1325)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1326)
2018-11-20 19:02:59 (58206): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1327)
2018-11-20 19:03:00 (58206): Guest Log: Tue Nov 20 19:02:57 UTC 2018 dhcp -------------------------------
2018-11-20 19:03:00 (58206): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2018-11-20 19:03:00 (58206): Guest Log: 00:00:00.000112 main     Log opened 2018-11-20T19:02:57.855691000Z
2018-11-20 19:03:00 (58206): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2018-11-20 19:03:00 (58206): Guest Log: 00:00:00.000112 main     Log opened 2018-11-20T19:02:57.855691000Z
2018-11-20 19:03:00 (58206): Guest Log: 00:00:00.018105 main     OS Product: Linux
2018-11-20 19:03:00 (58206): Guest Log: 00:00:00.018346 main     OS Release: 4.1.19-boot2docker
2018-11-20 19:03:00 (58206): Guest Log: 00:00:00.018458 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2018-11-20 19:03:00 (58206): Guest Log: 00:00:00.018552 main     Executable: /sbin/VBoxService
2018-11-20 19:03:00 (58206): Guest Log: 00:00:00.018554 main     Process ID: 852
2018-11-20 19:03:00 (58206): Guest Log: 00:00:00.018555 main     Package type: LINUX_64BITS_GENERIC
2018-11-20 19:03:00 (58206): Guest Log: 0000:00:00.020327 main     5.0.16 r105871 started. Verbose level = 0
2018-11-20 19:03:00 (58206): Guest Log: :00:00.018105 main     OS Product: Linux
2018-11-20 19:03:00 (58206): Guest Log: 00:00:00.018346 main     OS Release: 4.1.19-boot2docker
2018-11-20 19:03:00 (58206): Guest Log: 00:00:00.033727 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2018-11-20 19:03:00 (58206): Guest Log: 00:00:00.033902 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2018-11-20 19:03:00 (58206): Guest Log: 00:00:00.018458 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2018-11-20 19:03:00 (58206): Guest Log: 00:00:00.018552 main     Executable: /sbin/VBoxService
2018-11-20 19:03:00 (58206): Guest Log: 00:00:00.018554 main     Process ID: 852
2018-11-20 19:03:00 (58206): Guest Log: 00:00:00.018555 main     Package type: LINUX_64BITS_GENERIC
2018-11-20 19:03:00 (58206): Guest Log: 00:00:00.020327 main     5.0.16 r105871 started. Verbose level = 0
2018-11-20 19:03:00 (58206): Guest Log: Mounting BOINC shared/...
2018-11-20 19:03:00 (58206): Guest Log: -------------------
2018-11-20 19:03:00 (58206): Guest Log: Tue Nov 20 18:02:59 UTC 2018
2018-11-20 19:03:05 (58206): Guest Log: 00:00:05.035441 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2018-11-20 19:03:05 (58206): Guest Log: Tue Nov 20 18:03:04 UTC 2018
2018-11-20 19:03:05 (58206): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2018-11-20 19:03:05 (58206): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2018-11-20 19:03:05 (58206): Guest Log:     inet 127.0.0.1/8 scope host lo
2018-11-20 19:03:05 (58206): Guest Log:        valid_lft forever preferred_lft forever
2018-11-20 19:03:05 (58206): Guest Log:     inet6 ::1/128 scope host 
2018-11-20 19:03:05 (58206): Guest Log:        valid_lft forever preferred_lft forever
2018-11-20 19:03:05 (58206): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2018-11-20 19:03:05 (58206): Guest Log:     link/ether 9e:b9:4f:6e:fe:ba brd ff:ff:ff:ff:ff:ff
2018-11-20 19:03:05 (58206): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2018-11-20 19:03:05 (58206): Guest Log:     link/ether 08:00:27:b8:40:1d brd ff:ff:ff:ff:ff:ff
2018-11-20 19:03:05 (58206): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2018-11-20 19:03:05 (58206): Guest Log:        valid_lft forever preferred_lft forever
2018-11-20 19:03:05 (58206): Guest Log:     inet6 fe80::a00:27ff:feb8:401d/64 scope link 
2018-11-20 19:03:05 (58206): Guest Log:        valid_lft forever preferred_lft forever
2018-11-20 19:03:05 (58206): Guest Log: -------------------
2018-11-20 19:03:05 (58206): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2018-11-20 19:03:05 (58206): Guest Log: Waiting for Docker daemon to start...
2018-11-20 19:03:06 (58206): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2018-11-20 19:03:06 (58206): Guest Log: Running boinc_app...
2018-11-20 19:03:06 (58206): Guest Log: Importing Docker image from BOINC...
2018-11-20 19:03:06 (58206): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-11-20 19:03:06 (58206): Guest Log: tmpfs                     2.6G    164.2M      2.5G   6% /
2018-11-20 19:03:06 (58206): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-11-20 19:03:06 (58206): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-11-20 19:03:06 (58206): Guest Log: shared                    1.0T    431.0G    613.1G  41% /root/shared
2018-11-20 19:03:06 (58206): Guest Log: tmpfs                     2.6G    164.2M      2.5G   6% /var/lib/docker/aufs
2018-11-20 19:03:10 (58206): Guest Log: 00:00:10.039652 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2018-11-20 19:03:17 (58206): Guest Log: doing docker load...
2018-11-20 19:03:33 (58206): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-11-20 19:03:33 (58206): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /
2018-11-20 19:03:33 (58206): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-11-20 19:03:33 (58206): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-11-20 19:03:33 (58206): Guest Log: shared                    1.0T    431.0G    613.2G  41% /root/shared
2018-11-20 19:03:33 (58206): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /var/lib/docker/aufs
2018-11-20 19:03:33 (58206): Guest Log:               total        used        free      shared  buff/cache   available
2018-11-20 19:03:33 (58206): Guest Log: Mem:           3007          48        2257         663         702        2257
2018-11-20 19:03:33 (58206): Guest Log: Swap:           700           0         700
2018-11-20 19:03:33 (58206): Guest Log: Building apps directory...
2018-11-20 19:07:56 (58206): Guest Log: Prerun diagnostics...
2018-11-20 19:07:57 (58206): Guest Log: REPOSITORY                    TAG                 IMAGE ID            CREATED             SIZE
2018-11-20 19:07:57 (58206): Guest Log: nanohub_apps_share64_matlab   4                   32c863520615        11 months ago       488.2 MB
2018-11-20 19:07:57 (58206): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2018-11-20 19:07:57 (58206): Guest Log: 499.0M	/var/lib/docker
2018-11-20 19:07:57 (58206): Guest Log:               total        used        free      shared  buff/cache   available
2018-11-20 19:07:57 (58206): Guest Log: Mem:           3007          51        2239         663         715        2251
2018-11-20 19:07:57 (58206): Guest Log: Swap:           700           0         700
2018-11-20 19:07:57 (58206): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-11-20 19:07:57 (58206): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /
2018-11-20 19:07:57 (58206): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-11-20 19:07:57 (58206): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-11-20 19:07:57 (58206): Guest Log: shared                    1.0T    436.0G    608.1G  42% /root/shared
2018-11-20 19:07:57 (58206): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /var/lib/docker/aufs
2018-11-20 19:07:57 (58206): Guest Log: Running... 
2018-11-20 19:07:57 (58206): Guest Log: 06921568_007.boinc
2018-11-20 19:07:57 (58206): Guest Log: 06921568_007.sh
2018-11-20 19:13:07 (58206): Guest Log: boinc_app exited (0)
2018-11-20 19:13:07 (58206): Guest Log: Saving results...
2018-11-20 19:13:07 (58206): Guest Log: 06921568_007_output.tar.gz
2018-11-20 19:13:07 (58206): VM Completion File Detected.
2018-11-20 19:13:07 (58206): Powering off VM.
2018-11-20 19:13:08 (58206): Successfully stopped VM.
2018-11-20 19:13:08 (58206): Deregistering VM. (boinc_d8c2a1258679cdb9, slot#16)
2018-11-20 19:13:08 (58206): Removing network bandwidth throttle group from VM.
2018-11-20 19:13:08 (58206): Removing storage controller(s) from VM.
2018-11-20 19:13:08 (58206): Removing VM from VirtualBox.
2018-11-20 19:13:08 (58206): Removing virtual ISO 9660 disk from VirtualBox.
19:13:13 (58206): called boinc_finish(0)

</stderr_txt>
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