Task 3281942

Name 07274499_029_1
Workunit 2483652
Created 8 Jul 2019, 22:23:44 UTC
Sent 8 Jul 2019, 22:59:44 UTC
Report deadline 13 Jul 2019, 22:59:44 UTC
Received 9 Jul 2019, 15:57:37 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 2418
Run time 2 min 7 sec
CPU time 1 min 25 sec
Validate state Valid
Credit 1.60
Device peak FLOPS 2.45 GFLOPS
Application version boinc2docker v1.12 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 586.30 MB
Peak swap size 3.98 GB
Peak disk usage 290.13 MB

Stderr output

<core_client_version>7.9.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-07-09 11:27:46 (12592): vboxwrapper (7.7.26197): starting
2019-07-09 11:27:46 (12592): Feature: Checkpoint interval offset (419 seconds)
2019-07-09 11:27:46 (12592): Detected: VirtualBox VboxManage Interface (Version: 5.1.34)
2019-07-09 11:27:47 (12592): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-07-09 11:27:47 (12592): Create VM. (boinc_e9d483b1e8474528, slot#3)
2019-07-09 11:27:47 (12592): Updating drive controller type and model for desired configuration.
2019-07-09 11:27:48 (12592): Setting Memory Size for VM. (3072MB)
2019-07-09 11:27:48 (12592): Setting CPU Count for VM. (1)
2019-07-09 11:27:49 (12592): Setting Chipset Options for VM.
2019-07-09 11:27:49 (12592): Setting Boot Options for VM.
2019-07-09 11:27:50 (12592): Setting Network Configuration for NAT.
2019-07-09 11:27:50 (12592): Enabling VM Network Access.
2019-07-09 11:27:51 (12592): Disabling USB Support for VM.
2019-07-09 11:27:51 (12592): Disabling COM Port Support for VM.
2019-07-09 11:27:52 (12592): Disabling LPT Port Support for VM.
2019-07-09 11:27:52 (12592): Disabling Audio Support for VM.
2019-07-09 11:27:52 (12592): Disabling Clipboard Support for VM.
2019-07-09 11:27:52 (12592): Disabling Drag and Drop Support for VM.
2019-07-09 11:27:53 (12592): Adding storage controller(s) to VM.
2019-07-09 11:27:53 (12592): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-07-09 11:27:53 (12592): Adding VirtualBox Guest Additions to VM.
2019-07-09 11:27:53 (12592): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-07-09 11:27:54 (12592): Enabling shared directory for VM.
2019-07-09 11:27:54 (12592): Starting VM. (boinc_e9d483b1e8474528, slot#3)
2019-07-09 11:27:57 (12592): Successfully started VM. (PID = '13221')
2019-07-09 11:27:57 (12592): Reporting VM Process ID to BOINC.
2019-07-09 11:27:58 (12592): Guest Log: BIOS: VirtualBox 5.1.34
2019-07-09 11:27:58 (12592): VM state change detected. (old = 'poweroff', new = 'running')
2019-07-09 11:27:58 (12592): Preference change detected
2019-07-09 11:27:58 (12592): Setting CPU throttle for VM. (100%)
2019-07-09 11:27:58 (12592): Setting checkpoint interval to 3000 seconds. (Higher value of (Preference: 3000 seconds) or (Vbox_job.xml: 600 seconds))
2019-07-09 11:27:59 (12592): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-07-09 11:27:59 (12592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2019-07-09 11:27:59 (12592): Guest Log: BIOS: Boot from Hard Disk 0 failed
2019-07-09 11:27:59 (12592): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2019-07-09 11:27:59 (12592): Guest Log: BIOS: Booting from CD-ROM...
2019-07-09 11:28:11 (12592): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-07-09 11:28:11 (12592): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-07-09 11:28:23 (12592): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-07-09 11:28:23 (12592): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-07-09 11:28:27 (12592): Guest Log: net.ipv4.ip_forward = 1
2019-07-09 11:28:27 (12592): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-07-09 11:28:27 (12592): Guest Log: Segmentation fault
2019-07-09 11:28:27 (12592): Guest Log: automount ...
2019-07-09 11:28:27 (12592): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2019-07-09 11:28:27 (12592): Guest Log: automount over.
2019-07-09 11:28:27 (12592): Guest Log: Setting hostname to boot2docker Done.
2019-07-09 11:28:27 (12592): Guest Log: Tue Jul  9 11:28:24 UTC 2019 dhcp -------------------------------
2019-07-09 11:28:32 (12592): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2019-07-09 11:28:32 (12592): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1340)
2019-07-09 11:28:34 (12592): Guest Log: Tue Jul  9 11:28:30 UTC 2019 dhcp -------------------------------
2019-07-09 11:28:34 (12592): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-07-09 11:28:34 (12592): Guest Log: 00:00:00.000176 main     Log opened 2019-07-09T11:28:30.940498000Z
2019-07-09 11:28:34 (12592): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-07-09 11:28:34 (12592): Guest Log: 00:00:00.000176 main     Log opened 2019-07-09T11:28:30.940498000Z
2019-07-09 11:28:34 (12592): Guest Log: 00:00:00.003239 main     OS Product: Linux
2019-07-09 11:28:34 (12592): Guest Log: 00:00:00.003239 main     OS Product: Linux
2019-07-09 11:28:34 (12592): Guest Log: 00:00:00.004207 main     OS Release: 4.1.19-boot2docker
2019-07-09 11:28:34 (12592): Guest Log: 00:00:00.004269 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-07-09 11:28:34 (12592): Guest Log: 00:00:00.004322 main     Executable: /sbin/VBoxService
2019-07-09 11:28:34 (12592): Guest Log: 00:00:00.004329 main     Process ID: 818
2019-07-09 11:28:34 (12592): Guest Log: 00:00:00.004330 main     Package type: LINUX_64BITS_GENERIC
2019-07-09 11:28:34 (12592): Guest Log: 00:00:00.004207 main     OS Release: 4.1.19-boot2docker
2019-07-09 11:28:34 (12592): Guest Log: 00:00:00.004269 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-07-09 11:28:34 (12592): Guest Log: 00:00:00.004322 main     Executable: /sbin/VBoxService
2019-07-09 11:28:34 (12592): Guest Log: 00:00:00.004329 main     Process ID: 818
2019-07-09 11:28:34 (12592): Guest Log: 00:00:00.004330 main     Package type: LINUX_64BITS_GENERIC
2019-07-09 11:28:34 (12592): Guest Log: 00:00:00.013476 main     5.0.16 r105871 started. Verbose level = 0
2019-07-09 11:28:34 (12592): Guest Log: 00:00:00.013476 main     5.0.16 r105871 started. Verbose level = 0
2019-07-09 11:28:34 (12592): Guest Log: 00:00:00.044985 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2019-07-09 11:28:34 (12592): Guest Log: 00:00:00.045057 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2019-07-09 11:28:34 (12592): Guest Log: Mounting BOINC shared/...
2019-07-09 11:28:34 (12592): Guest Log: -------------------
2019-07-09 11:28:34 (12592): Guest Log: Tue Jul  9 15:28:33 UTC 2019
2019-07-09 11:28:38 (12592): Guest Log: 00:00:05.052617 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2019-07-09 11:28:38 (12592): Guest Log: Tue Jul  9 15:56:13 UTC 2019
2019-07-09 11:28:38 (12592): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2019-07-09 11:28:38 (12592): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2019-07-09 11:28:38 (12592): Guest Log:     inet 127.0.0.1/8 scope host lo
2019-07-09 11:28:38 (12592): Guest Log:        valid_lft forever preferred_lft forever
2019-07-09 11:28:38 (12592): Guest Log:     inet6 ::1/128 scope host 
2019-07-09 11:28:38 (12592): Guest Log:        valid_lft forever preferred_lft forever
2019-07-09 11:28:38 (12592): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2019-07-09 11:28:38 (12592): Guest Log:     link/ether 4a:5f:89:31:30:a0 brd ff:ff:ff:ff:ff:ff
2019-07-09 11:28:38 (12592): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2019-07-09 11:28:38 (12592): Guest Log:     link/ether 08:00:27:08:8a:74 brd ff:ff:ff:ff:ff:ff
2019-07-09 11:28:38 (12592): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2019-07-09 11:28:38 (12592): Guest Log:        valid_lft forever preferred_lft forever
2019-07-09 11:28:38 (12592): Guest Log:     inet6 fe80::a00:27ff:fe08:8a74/64 scope link 
2019-07-09 11:28:38 (12592): Guest Log:        valid_lft forever preferred_lft forever
2019-07-09 11:28:38 (12592): Guest Log: -------------------
2019-07-09 11:28:38 (12592): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2019-07-09 11:28:38 (12592): Guest Log: Waiting for Docker daemon to start...
2019-07-09 11:28:39 (12592): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-07-09 11:28:39 (12592): Guest Log: Running boinc_app...
2019-07-09 11:28:39 (12592): Guest Log: Importing Docker image from BOINC...
2019-07-09 11:28:39 (12592): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-07-09 11:28:39 (12592): Guest Log: tmpfs                     2.6G    164.2M      2.5G   6% /
2019-07-09 11:28:39 (12592): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-07-09 11:28:39 (12592): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2019-07-09 11:28:39 (12592): Guest Log: shared                   57.3G     24.7G     32.6G  43% /root/shared
2019-07-09 11:28:39 (12592): Guest Log: tmpfs                     2.6G    164.2M      2.5G   6% /var/lib/docker/aufs
2019-07-09 11:28:44 (12592): Guest Log: 00:00:10.056346 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2019-07-09 11:28:52 (12592): Guest Log: doing docker load...
2019-07-09 11:29:22 (12592): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-07-09 11:29:22 (12592): Guest Log: tmpfs                     2.6G    803.4M      1.9G  30% /
2019-07-09 11:29:22 (12592): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-07-09 11:29:22 (12592): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2019-07-09 11:29:22 (12592): Guest Log: shared                   57.3G     24.4G     32.9G  43% /root/shared
2019-07-09 11:29:22 (12592): Guest Log: tmpfs                     2.6G    803.4M      1.9G  30% /var/lib/docker/aufs
2019-07-09 11:29:22 (12592): Guest Log:               total        used        free      shared  buff/cache   available
2019-07-09 11:29:22 (12592): Guest Log: Mem:           3007          50        2107         803         849        2110
2019-07-09 11:29:22 (12592): Guest Log: Swap:           701           0         701
2019-07-09 11:29:22 (12592): Guest Log: Building apps directory...
2019-07-09 11:29:29 (12592): Guest Log: Prerun diagnostics...
2019-07-09 11:29:29 (12592): Guest Log: REPOSITORY           TAG                 IMAGE ID            CREATED             SIZE
2019-07-09 11:29:29 (12592): Guest Log: nanohub_apps_scipy   4                   1c97f9c9808f        19 months ago       627.2 MB
2019-07-09 11:29:29 (12592): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2019-07-09 11:29:29 (12592): Guest Log: 639.3M	/var/lib/docker
2019-07-09 11:29:29 (12592): Guest Log:               total        used        free      shared  buff/cache   available
2019-07-09 11:29:29 (12592): Guest Log: Mem:           3007          52        2103         803         851        2108
2019-07-09 11:29:29 (12592): Guest Log: Swap:           701           0         701
2019-07-09 11:29:29 (12592): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-07-09 11:29:29 (12592): Guest Log: tmpfs                     2.6G    803.4M      1.9G  30% /
2019-07-09 11:29:29 (12592): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-07-09 11:29:29 (12592): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2019-07-09 11:29:29 (12592): Guest Log: shared                   57.3G     24.5G     32.8G  43% /root/shared
2019-07-09 11:29:29 (12592): Guest Log: tmpfs                     2.6G    803.4M      1.9G  30% /var/lib/docker/aufs
2019-07-09 11:29:29 (12592): Guest Log: Running... 
2019-07-09 11:29:30 (12592): Guest Log: 07274499_029.boinc
2019-07-09 11:29:30 (12592): Guest Log: 07274499_029.sh
2019-07-09 11:29:44 (12592): Guest Log: boinc_app exited (0)
2019-07-09 11:29:44 (12592): Guest Log: Saving results...
2019-07-09 11:29:44 (12592): Guest Log: 07274499_029_output.tar.gz
2019-07-09 11:29:44 (12592): VM Completion File Detected.
2019-07-09 11:29:44 (12592): Powering off VM.
2019-07-09 11:29:45 (12592): Successfully stopped VM.
2019-07-09 11:29:45 (12592): Deregistering VM. (boinc_e9d483b1e8474528, slot#3)
2019-07-09 11:29:45 (12592): Removing network bandwidth throttle group from VM.
2019-07-09 11:29:46 (12592): Removing storage controller(s) from VM.
2019-07-09 11:29:46 (12592): Removing VM from VirtualBox.
2019-07-09 11:29:46 (12592): Removing virtual ISO 9660 disk from VirtualBox.
11:29:51 (12592): called boinc_finish(0)

</stderr_txt>
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