Task 4130716

Name 07414841_007_1
Workunit 3299379
Created 29 Jul 2019, 0:18:03 UTC
Sent 29 Jul 2019, 0:18:05 UTC
Report deadline 3 Aug 2019, 0:18:05 UTC
Received 29 Jul 2019, 1:45:58 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 2331
Run time 6 min 30 sec
CPU time 6 min 8 sec
Validate state Valid
Credit 4.93
Device peak FLOPS 2.83 GFLOPS
Application version boinc2docker v1.12 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 1.89 GB
Peak swap size 3.63 GB
Peak disk usage 821.70 MB

Stderr output

<core_client_version>7.9.3</core_client_version>
<![CDATA[
<stderr_txt>
2019-07-28 20:38:09 (16006): vboxwrapper (7.7.26197): starting
2019-07-28 20:38:09 (16006): Feature: Checkpoint interval offset (422 seconds)
2019-07-28 20:38:09 (16006): Detected: VirtualBox VboxManage Interface (Version: 5.2.18)
2019-07-28 20:38:10 (16006): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-07-28 20:38:10 (16006): Create VM. (boinc_433ffe9aa48eaff9, slot#6)
2019-07-28 20:38:10 (16006): Updating drive controller type and model for desired configuration.
2019-07-28 20:38:12 (16006): Setting Memory Size for VM. (3072MB)
2019-07-28 20:38:12 (16006): Setting CPU Count for VM. (1)
2019-07-28 20:38:12 (16006): Setting Chipset Options for VM.
2019-07-28 20:38:13 (16006): Setting Boot Options for VM.
2019-07-28 20:38:13 (16006): Setting Network Configuration for NAT.
2019-07-28 20:38:14 (16006): Enabling VM Network Access.
2019-07-28 20:38:14 (16006): Disabling USB Support for VM.
2019-07-28 20:38:14 (16006): Disabling COM Port Support for VM.
2019-07-28 20:38:15 (16006): Disabling LPT Port Support for VM.
2019-07-28 20:38:15 (16006): Disabling Audio Support for VM.
2019-07-28 20:38:16 (16006): Disabling Clipboard Support for VM.
2019-07-28 20:38:17 (16006): Disabling Drag and Drop Support for VM.
2019-07-28 20:38:17 (16006): Adding storage controller(s) to VM.
2019-07-28 20:38:18 (16006): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-07-28 20:38:18 (16006): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-07-28 20:38:19 (16006): Enabling shared directory for VM.
2019-07-28 20:38:20 (16006): Starting VM. (boinc_433ffe9aa48eaff9, slot#6)
2019-07-28 20:38:23 (16006): Successfully started VM. (PID = '17059')
2019-07-28 20:38:23 (16006): Reporting VM Process ID to BOINC.
2019-07-28 20:38:23 (16006): Guest Log: BIOS: VirtualBox 5.2.18
2019-07-28 20:38:23 (16006): Guest Log: CPUID EDX: 0x078bfbff
2019-07-28 20:38:24 (16006): VM state change detected. (old = 'poweroff', new = 'running')
2019-07-28 20:38:24 (16006): Preference change detected
2019-07-28 20:38:24 (16006): Setting CPU throttle for VM. (100%)
2019-07-28 20:38:25 (16006): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2019-07-28 20:38:29 (16006): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-07-28 20:38:29 (16006): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2019-07-28 20:38:29 (16006): Guest Log: BIOS: Boot from Hard Disk 0 failed
2019-07-28 20:38:29 (16006): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2019-07-28 20:38:29 (16006): Guest Log: BIOS: Booting from CD-ROM...
2019-07-28 20:38:33 (16006): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-07-28 20:38:33 (16006): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-07-28 20:38:48 (16006): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-07-28 20:38:48 (16006): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-07-28 20:38:55 (16006): Guest Log: net.ipv4.ip_forward = 1
2019-07-28 20:38:55 (16006): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2019-07-28 20:38:55 (16006): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-07-28 20:38:55 (16006): Guest Log: sysctl: "cannot stat %s" is an unknown key
2019-07-28 20:38:55 (16006): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-07-28 20:38:55 (16006): Guest Log: Segmentation fault
2019-07-28 20:38:56 (16006): Guest Log: automount ...
2019-07-28 20:38:56 (16006): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2019-07-28 20:38:56 (16006): Guest Log: automount over.
2019-07-28 20:38:56 (16006): Guest Log: Setting hostname to boot2docker Done.
2019-07-28 20:38:56 (16006): Guest Log: Sun Jul 28 20:38:52 UTC 2019 dhcp -------------------------------
2019-07-28 20:39:01 (16006): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2019-07-28 20:39:01 (16006): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1316)
2019-07-28 20:39:02 (16006): Guest Log: Sun Jul 28 20:38:58 UTC 2019 dhcp -------------------------------
2019-07-28 20:39:02 (16006): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-07-28 20:39:02 (16006): Guest Log: 00:00:00.000349 main     Log opened 2019-07-28T20:38:59.110663000Z
2019-07-28 20:39:02 (16006): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-07-28 20:39:02 (16006): Guest Log: 00:00:00.016630 main     OS Product: Linux
2019-07-28 20:39:02 (16006): Guest Log: 00:00:00.017486 main     OS Release: 4.1.19-boot2docker
2019-07-28 20:39:02 (16006): Guest Log: 00:00:00.017598 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-07-28 20:39:02 (16006): Guest Log: 00:00:00.017676 main     Executable: /sbin/VBoxService
2019-07-28 20:39:02 (16006): Guest Log: 00:00:00.017678 main     Process ID: 771
2019-07-28 20:39:02 (16006): Guest Log: 00:00:00.017680 main     Package type: LINUX_64BITS_GENERIC
2019-07-28 20:39:02 (16006): Guest Log: 00:00:00.000349 main     Log opened 2019-07-28T20:38:59.110663000Z
2019-07-28 20:39:02 (16006): Guest Log: 00:00:00.016630 main     OS Product: Linux
2019-07-28 20:39:02 (16006): Guest Log: 00:00:00.017486 main     OS Release: 4.1.19-boot2docker
2019-07-28 20:39:02 (16006): Guest Log: 00:00:00.017598 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-07-28 20:39:02 (16006): Guest Log: 00:00:00.017676 main     Executable: /sbin/VBoxService
2019-07-28 20:39:02 (16006): Guest Log: 00:00:00.017678 main     Process ID: 771
2019-07-28 20:39:02 (16006): Guest Log: 00:00:00.017680 main     Package type: LINUX_64BITS_GENERIC
2019-07-28 20:39:02 (16006): Guest Log: 00:00:00.048374 main     5.0.16 r105871 started. Verbose level = 0
2019-07-28 20:39:02 (16006): Guest Log: 00:00:00.048374 main     5.0.16 r105871 started. Verbose level = 0
2019-07-28 20:39:02 (16006): Guest Log: 00:00:00.087940 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2019-07-28 20:39:02 (16006): Guest Log: 00:00:00.088122 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2019-07-28 20:39:02 (16006): Guest Log: Mounting BOINC shared/...
2019-07-28 20:39:02 (16006): Guest Log: -------------------
2019-07-28 20:39:02 (16006): Guest Log: Mon Jul 29 01:39:02 UTC 2019
2019-07-28 20:39:08 (16006): Guest Log: 00:00:05.106015 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2019-07-28 20:39:08 (16006): Guest Log: Mon Jul 29 01:39:07 UTC 2019
2019-07-28 20:39:08 (16006): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2019-07-28 20:39:08 (16006): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2019-07-28 20:39:08 (16006): Guest Log:     inet 127.0.0.1/8 scope host lo
2019-07-28 20:39:08 (16006): Guest Log:        valid_lft forever preferred_lft forever
2019-07-28 20:39:08 (16006): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2019-07-28 20:39:08 (16006): Guest Log:     link/ether 6a:a6:2f:8a:88:d2 brd ff:ff:ff:ff:ff:ff
2019-07-28 20:39:08 (16006): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2019-07-28 20:39:08 (16006): Guest Log:     link/ether 08:00:27:dc:f7:4b brd ff:ff:ff:ff:ff:ff
2019-07-28 20:39:08 (16006): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2019-07-28 20:39:08 (16006): Guest Log:        valid_lft forever preferred_lft forever
2019-07-28 20:39:08 (16006): Guest Log: -------------------
2019-07-28 20:39:08 (16006): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2019-07-28 20:39:08 (16006): Guest Log: Waiting for Docker daemon to start...
2019-07-28 20:39:10 (16006): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-07-28 20:39:10 (16006): Guest Log: Running boinc_app...
2019-07-28 20:39:10 (16006): Guest Log: Importing Docker image from BOINC...
2019-07-28 20:39:10 (16006): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-07-28 20:39:10 (16006): Guest Log: tmpfs                     2.6G    164.2M      2.5G   6% /
2019-07-28 20:39:10 (16006): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-07-28 20:39:10 (16006): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2019-07-28 20:39:13 (16006): Guest Log: 00:00:10.108716 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2019-07-28 20:39:29 (16006): Guest Log: doing docker load...
2019-07-28 20:40:11 (16006): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-07-28 20:40:11 (16006): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /
2019-07-28 20:40:11 (16006): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-07-28 20:40:11 (16006): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2019-07-28 20:40:11 (16006): Guest Log: shared                  109.5G     23.7G     85.9G  22% /root/shared
2019-07-28 20:40:11 (16006): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /var/lib/docker/aufs
2019-07-28 20:40:11 (16006): Guest Log:               total        used        free      shared  buff/cache   available
2019-07-28 20:40:11 (16006): Guest Log: Mem:           3007          47        2258         663         701        2258
2019-07-28 20:40:11 (16006): Guest Log: Swap:           701           0         701
2019-07-28 20:40:11 (16006): Guest Log: Building apps directory...
2019-07-28 20:41:56 (16006): Guest Log: Prerun diagnostics...
2019-07-28 20:41:56 (16006): Guest Log: REPOSITORY                    TAG                 IMAGE ID            CREATED             SIZE
2019-07-28 20:41:56 (16006): Guest Log: nanohub_apps_share64_matlab   4                   32c863520615        20 months ago       488.2 MB
2019-07-28 20:41:56 (16006): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2019-07-28 20:41:56 (16006): Guest Log: 499.0M	/var/lib/docker
2019-07-28 20:41:56 (16006): Guest Log:               total        used        free      shared  buff/cache   available
2019-07-28 20:41:56 (16006): Guest Log: Mem:           3007          50        2243         663         713        2253
2019-07-28 20:41:56 (16006): Guest Log: Swap:           701           0         701
2019-07-28 20:41:56 (16006): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-07-28 20:41:56 (16006): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /
2019-07-28 20:41:56 (16006): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-07-28 20:41:56 (16006): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2019-07-28 20:41:56 (16006): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /var/lib/docker/aufs
2019-07-28 20:41:56 (16006): Guest Log: Running... 
2019-07-28 20:41:56 (16006): Guest Log: 07414841_007.boinc
2019-07-28 20:41:56 (16006): Guest Log: 07414841_007.sh
2019-07-28 20:45:39 (16006): Guest Log: boinc_app exited (0)
2019-07-28 20:45:39 (16006): Guest Log: Saving results...
2019-07-28 20:45:39 (16006): Guest Log: 07414841_007_output.tar.gz
2019-07-28 20:45:39 (16006): VM Completion File Detected.
2019-07-28 20:45:39 (16006): Powering off VM.
2019-07-28 20:45:41 (16006): Successfully stopped VM.
2019-07-28 20:45:41 (16006): Deregistering VM. (boinc_433ffe9aa48eaff9, slot#6)
2019-07-28 20:45:41 (16006): Removing network bandwidth throttle group from VM.
2019-07-28 20:45:41 (16006): Removing storage controller(s) from VM.
2019-07-28 20:45:41 (16006): Removing VM from VirtualBox.
2019-07-28 20:45:42 (16006): Removing virtual ISO 9660 disk from VirtualBox.
20:45:47 (16006): called boinc_finish(0)

</stderr_txt>
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