Task 4390053

Name 07462959_107_0
Workunit 3529566
Created 19 Aug 2019, 19:16:07 UTC
Sent 19 Aug 2019, 21:21:01 UTC
Report deadline 24 Aug 2019, 21:21:01 UTC
Received 19 Aug 2019, 22:36:01 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 2418
Run time 2 min 26 sec
CPU time 1 min 50 sec
Validate state Valid
Credit 2.00
Device peak FLOPS 2.45 GFLOPS
Application version boinc2docker v1.12 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 456.05 MB
Peak swap size 3.78 GB
Peak disk usage 290.76 MB

Stderr output

<core_client_version>7.9.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-08-19 18:03:29 (20821): vboxwrapper (7.7.26197): starting
2019-08-19 18:03:29 (20821): Feature: Checkpoint interval offset (181 seconds)
2019-08-19 18:03:29 (20821): Detected: VirtualBox VboxManage Interface (Version: 5.1.34)
2019-08-19 18:03:29 (20821): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-08-19 18:03:30 (20821): Create VM. (boinc_b0a77617fee3b820, slot#6)
2019-08-19 18:03:30 (20821): Updating drive controller type and model for desired configuration.
2019-08-19 18:03:30 (20821): Setting Memory Size for VM. (3072MB)
2019-08-19 18:03:30 (20821): Setting CPU Count for VM. (1)
2019-08-19 18:03:30 (20821): Setting Chipset Options for VM.
2019-08-19 18:03:30 (20821): Setting Boot Options for VM.
2019-08-19 18:03:31 (20821): Setting Network Configuration for NAT.
2019-08-19 18:03:31 (20821): Enabling VM Network Access.
2019-08-19 18:03:31 (20821): Disabling USB Support for VM.
2019-08-19 18:03:31 (20821): Disabling COM Port Support for VM.
2019-08-19 18:03:31 (20821): Disabling LPT Port Support for VM.
2019-08-19 18:03:31 (20821): Disabling Audio Support for VM.
2019-08-19 18:03:31 (20821): Disabling Clipboard Support for VM.
2019-08-19 18:03:32 (20821): Disabling Drag and Drop Support for VM.
2019-08-19 18:03:32 (20821): Adding storage controller(s) to VM.
2019-08-19 18:03:32 (20821): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-08-19 18:03:32 (20821): Adding VirtualBox Guest Additions to VM.
2019-08-19 18:03:32 (20821): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-08-19 18:03:32 (20821): Enabling shared directory for VM.
2019-08-19 18:03:33 (20821): Starting VM. (boinc_b0a77617fee3b820, slot#6)
2019-08-19 18:03:35 (20821): Successfully started VM. (PID = '22002')
2019-08-19 18:03:35 (20821): Reporting VM Process ID to BOINC.
2019-08-19 18:03:35 (20821): Guest Log: BIOS: VirtualBox 5.1.34
2019-08-19 18:03:35 (20821): VM state change detected. (old = 'poweroff', new = 'running')
2019-08-19 18:03:36 (20821): Preference change detected
2019-08-19 18:03:36 (20821): Setting CPU throttle for VM. (100%)
2019-08-19 18:03:37 (20821): Setting checkpoint interval to 3000 seconds. (Higher value of (Preference: 3000 seconds) or (Vbox_job.xml: 600 seconds))
2019-08-19 18:03:38 (20821): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-08-19 18:03:38 (20821): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2019-08-19 18:03:38 (20821): Guest Log: BIOS: Boot from Hard Disk 0 failed
2019-08-19 18:03:38 (20821): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2019-08-19 18:03:38 (20821): Guest Log: BIOS: Booting from CD-ROM...
2019-08-19 18:04:12 (20821): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-08-19 18:04:12 (20821): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-08-19 18:04:24 (20821): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-08-19 18:04:24 (20821): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-08-19 18:04:24 (20821): Guest Log: net.ipv4.ip_forward = 1
2019-08-19 18:04:24 (20821): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2019-08-19 18:04:24 (20821): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-08-19 18:04:24 (20821): Guest Log: sysctl: "cannot stat %s" is an unknown key
2019-08-19 18:04:24 (20821): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-08-19 18:04:24 (20821): Guest Log: Segmentation fault
2019-08-19 18:04:24 (20821): Guest Log: automount ...
2019-08-19 18:04:24 (20821): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2019-08-19 18:04:24 (20821): Guest Log: automount over.
2019-08-19 18:04:24 (20821): Guest Log: Setting hostname to boot2docker Done.
2019-08-19 18:04:24 (20821): Guest Log: Mon Aug 19 18:04:22 UTC 2019 dhcp -------------------------------
2019-08-19 18:04:29 (20821): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1081)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00 (1306)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1307)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1308)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1309)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1310)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1311)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1312)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1313)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1314)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1315)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1316)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1317)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1318)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:01 (1319)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6 (1320)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6/event5 (1321)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1322)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1323)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1324)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1325)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1326)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1327)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1328)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1329)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1330)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1331)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1332)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1333)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1334)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1335)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1336)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1337)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1338)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1339)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1340)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:02 (1341)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1342)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1343)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1344)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1345)
2019-08-19 18:04:29 (20821): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1346)
2019-08-19 18:04:30 (20821): Guest Log: Mon Aug 19 18:04:29 UTC 2019 dhcp -------------------------------
2019-08-19 18:04:30 (20821): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-08-19 18:04:30 (20821): Guest Log: 00:00:00.000182 main     Log opened 2019-08-19T18:04:29.121853000Z
2019-08-19 18:04:30 (20821): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-08-19 18:04:30 (20821): Guest Log: 00:00:00.000182 main     Log opened 2019-08-19T18:04:29.121853000Z
2019-08-19 18:04:30 (20821): Guest Log: 00:00:00.003033 main     OS Product: Linux
2019-08-19 18:04:30 (20821): Guest Log: 00:00:00.004068 main     Executable: /sbin/VBoxService
2019-08-19 18:04:30 (20821): Guest Log: 00:00:00.004074 main     Process ID: 819
2019-08-19 18:04:30 (20821): Guest Log: 00:00:00.004075 main     Package type: LINUX_64BITS_GENERIC
2019-08-19 18:04:30 (20821): Guest Log: 00:00:00.010121 main     5.0.16 r105871 started. Verbose level = 0
2019-08-19 18:04:30 (20821): Guest Log: 00:00:00.010121 main     5.0.16 r105871 started. Verbose level = 0
2019-08-19 18:04:30 (20821): Guest Log: 00:00:00.034521 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2019-08-19 18:04:30 (20821): Guest Log: 00:00:00.034646 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2019-08-19 18:04:30 (20821): Guest Log: Mounting BOINC shared/...
2019-08-19 18:04:30 (20821): Guest Log: -------------------
2019-08-19 18:04:30 (20821): Guest Log: Mon Aug 19 22:04:30 UTC 2019
2019-08-19 18:04:36 (20821): Guest Log: 00:00:05.039357 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2019-08-19 18:04:36 (20821): Guest Log: Mon Aug 19 22:34:30 UTC 2019
2019-08-19 18:04:36 (20821): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2019-08-19 18:04:36 (20821): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2019-08-19 18:04:36 (20821): Guest Log:     inet 127.0.0.1/8 scope host lo
2019-08-19 18:04:36 (20821): Guest Log:        valid_lft forever preferred_lft forever
2019-08-19 18:04:36 (20821): Guest Log:     inet6 ::1/128 scope host 
2019-08-19 18:04:36 (20821): Guest Log:        valid_lft forever preferred_lft forever
2019-08-19 18:04:36 (20821): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2019-08-19 18:04:36 (20821): Guest Log:     link/ether c2:5f:73:f6:33:ee brd ff:ff:ff:ff:ff:ff
2019-08-19 18:04:36 (20821): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2019-08-19 18:04:36 (20821): Guest Log:     link/ether 08:00:27:38:7f:30 brd ff:ff:ff:ff:ff:ff
2019-08-19 18:04:36 (20821): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2019-08-19 18:04:36 (20821): Guest Log:        valid_lft forever preferred_lft forever
2019-08-19 18:04:36 (20821): Guest Log:     inet6 fe80::a00:27ff:fe38:7f30/64 scope link 
2019-08-19 18:04:36 (20821): Guest Log:        valid_lft forever preferred_lft forever
2019-08-19 18:04:36 (20821): Guest Log: -------------------
2019-08-19 18:04:36 (20821): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2019-08-19 18:04:36 (20821): Guest Log: Waiting for Docker daemon to start...
2019-08-19 18:04:39 (20821): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-08-19 18:04:39 (20821): Guest Log: Running boinc_app...
2019-08-19 18:04:39 (20821): Guest Log: Importing Docker image from BOINC...
2019-08-19 18:04:39 (20821): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-08-19 18:04:39 (20821): Guest Log: tmpfs                     2.6G    164.2M      2.5G   6% /
2019-08-19 18:04:39 (20821): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-08-19 18:04:39 (20821): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2019-08-19 18:04:39 (20821): Guest Log: shared                   57.3G     26.7G     30.5G  47% /root/shared
2019-08-19 18:04:39 (20821): Guest Log: tmpfs                     2.6G    164.2M      2.5G   6% /var/lib/docker/aufs
2019-08-19 18:04:42 (20821): Guest Log: 00:00:10.042907 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2019-08-19 18:04:53 (20821): Guest Log: doing docker load...
2019-08-19 18:05:22 (20821): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-08-19 18:05:22 (20821): Guest Log: tmpfs                     2.6G    803.4M      1.9G  30% /
2019-08-19 18:05:22 (20821): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-08-19 18:05:22 (20821): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2019-08-19 18:05:22 (20821): Guest Log: shared                   57.3G     26.1G     31.1G  46% /root/shared
2019-08-19 18:05:22 (20821): Guest Log: tmpfs                     2.6G    803.4M      1.9G  30% /var/lib/docker/aufs
2019-08-19 18:05:24 (20821): Guest Log:               total        used        free      shared  buff/cache   available
2019-08-19 18:05:24 (20821): Guest Log: Mem:           3007          48        2109         803         849        2112
2019-08-19 18:05:24 (20821): Guest Log: Swap:           701           0         701
2019-08-19 18:05:24 (20821): Guest Log: Building apps directory...
2019-08-19 18:05:33 (20821): Guest Log: Prerun diagnostics...
2019-08-19 18:05:33 (20821): Guest Log: REPOSITORY           TAG                 IMAGE ID            CREATED             SIZE
2019-08-19 18:05:33 (20821): Guest Log: nanohub_apps_scipy   4                   1c97f9c9808f        20 months ago       627.2 MB
2019-08-19 18:05:33 (20821): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2019-08-19 18:05:33 (20821): Guest Log: 639.3M	/var/lib/docker
2019-08-19 18:05:33 (20821): Guest Log:               total        used        free      shared  buff/cache   available
2019-08-19 18:05:33 (20821): Guest Log: Mem:           3007          48        2107         803         851        2111
2019-08-19 18:05:33 (20821): Guest Log: Swap:           701           0         701
2019-08-19 18:05:33 (20821): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-08-19 18:05:33 (20821): Guest Log: tmpfs                     2.6G    803.4M      1.9G  30% /
2019-08-19 18:05:33 (20821): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-08-19 18:05:33 (20821): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2019-08-19 18:05:33 (20821): Guest Log: shared                   57.3G     26.3G     31.0G  46% /root/shared
2019-08-19 18:05:33 (20821): Guest Log: tmpfs                     2.6G    803.4M      1.9G  30% /var/lib/docker/aufs
2019-08-19 18:05:33 (20821): Guest Log: Running... 
2019-08-19 18:05:33 (20821): Guest Log: 07462959_107.boinc
2019-08-19 18:05:33 (20821): Guest Log: 07462959_107.sh
2019-08-19 18:05:47 (20821): Guest Log: boinc_app exited (0)
2019-08-19 18:05:47 (20821): Guest Log: Saving results...
2019-08-19 18:05:47 (20821): Guest Log: 07462959_107_output.tar.gz
2019-08-19 18:05:47 (20821): VM Completion File Detected.
2019-08-19 18:05:47 (20821): Powering off VM.
2019-08-19 18:05:48 (20821): Successfully stopped VM.
2019-08-19 18:05:48 (20821): Deregistering VM. (boinc_b0a77617fee3b820, slot#6)
2019-08-19 18:05:48 (20821): Removing network bandwidth throttle group from VM.
2019-08-19 18:05:48 (20821): Removing storage controller(s) from VM.
2019-08-19 18:05:48 (20821): Removing VM from VirtualBox.
2019-08-19 18:05:48 (20821): Removing virtual ISO 9660 disk from VirtualBox.
18:05:54 (20821): called boinc_finish(0)

</stderr_txt>
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