Task 493018

Name 07005416_221_0
Workunit 277038
Created 28 Dec 2018, 22:22:19 UTC
Sent 28 Dec 2018, 22:22:47 UTC
Report deadline 30 Dec 2018, 22:22:47 UTC
Received 28 Dec 2018, 23:24:35 UTC
Server state Over
Outcome Computation error
Client state Compute error
Exit status 194 (0x000000C2) EXIT_ABORTED_BY_CLIENT
Computer ID 699
Run time 49 sec
CPU time 2 min 45 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 4.43 GFLOPS
Application version boinc2docker v1.12 (vbox64_mt)
x86_64-pc-linux-gnu
Peak disk usage 1.13 GB

Stderr output

<core_client_version>7.6.31</core_client_version>
<![CDATA[
<message>
finish file present too long
</message>
<stderr_txt>
2018-12-28 23:04:34 (97536): vboxwrapper (7.7.26197): starting
2018-12-28 23:04:34 (97536): Feature: Checkpoint interval offset (239 seconds)
2018-12-28 23:04:34 (97536): Detected: VirtualBox VboxManage Interface (Version: 5.2.8)
2018-12-28 23:04:34 (97536): Detected: Minimum checkpoint interval (600.000000 seconds)
2018-12-28 23:04:34 (97536): Create VM. (boinc_10ef5284d69cbfb8, slot#96)
2018-12-28 23:04:34 (97536): Updating drive controller type and model for desired configuration.
2018-12-28 23:04:35 (97536): Setting Memory Size for VM. (3072MB)
2018-12-28 23:04:35 (97536): Setting CPU Count for VM. (1)
2018-12-28 23:04:35 (97536): Setting Chipset Options for VM.
2018-12-28 23:04:35 (97536): Setting Boot Options for VM.
2018-12-28 23:04:35 (97536): Setting Network Configuration for NAT.
2018-12-28 23:04:35 (97536): Enabling VM Network Access.
2018-12-28 23:04:36 (97536): Disabling USB Support for VM.
2018-12-28 23:04:36 (97536): Disabling COM Port Support for VM.
2018-12-28 23:04:36 (97536): Disabling LPT Port Support for VM.
2018-12-28 23:04:36 (97536): Disabling Audio Support for VM.
2018-12-28 23:04:37 (97536): Disabling Clipboard Support for VM.
2018-12-28 23:04:37 (97536): Disabling Drag and Drop Support for VM.
2018-12-28 23:04:37 (97536): Adding storage controller(s) to VM.
2018-12-28 23:04:37 (97536): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2018-12-28 23:04:37 (97536): Adding VirtualBox Guest Additions to VM.
2018-12-28 23:04:37 (97536): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2018-12-28 23:04:38 (97536): Enabling shared directory for VM.
2018-12-28 23:04:38 (97536): Starting VM. (boinc_10ef5284d69cbfb8, slot#96)
2018-12-28 23:04:39 (97536): Successfully started VM. (PID = '101559')
2018-12-28 23:04:39 (97536): Reporting VM Process ID to BOINC.
2018-12-28 23:04:52 (97536): Guest Log: BIOS: VirtualBox 5.2.8
2018-12-28 23:04:52 (97536): Guest Log: CPUID EDX: 0x078bfbff
2018-12-28 23:04:52 (97536): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2018-12-28 23:04:52 (97536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2018-12-28 23:04:52 (97536): Guest Log: BIOS: Boot from Hard Disk 0 failed
2018-12-28 23:04:52 (97536): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2018-12-28 23:04:52 (97536): Guest Log: BIOS: Booting from CD-ROM...
2018-12-28 23:04:52 (97536): VM state change detected. (old = 'poweroff', new = 'running')
2018-12-28 23:04:53 (97536): Preference change detected
2018-12-28 23:04:53 (97536): Setting CPU throttle for VM. (100%)
2018-12-28 23:06:15 (97536): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2018-12-28 23:06:17 (97536): Guest Log: BIOS: KBD: unsupported int 16h function 03
2018-12-28 23:06:17 (97536): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2018-12-28 23:07:20 (97536): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2018-12-28 23:07:20 (97536): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2018-12-28 23:07:25 (97536): Guest Log: net.ipv4.ip_forward = 1
2018-12-28 23:07:25 (97536): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2018-12-28 23:07:25 (97536): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2018-12-28 23:07:25 (97536): Guest Log: Segmentation fault
2018-12-28 23:07:25 (97536): Guest Log: automount ...
2018-12-28 23:07:25 (97536): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2018-12-28 23:07:25 (97536): Guest Log: automount over.
2018-12-28 23:07:25 (97536): Guest Log: Setting hostname to boot2docker Done.
2018-12-28 23:07:25 (97536): Guest Log: Fri Dec 28 23:07:19 UTC 2018 dhcp -------------------------------
2018-12-28 23:07:26 (97536): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata1/host0/target0:0:0/0:0:0:0/block/sr0 (1107)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata3/host2/target2:0:0/2:0:0:0/block/sr1 (1123)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1340)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0 (1361)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata1/ata_port/ata1 (1362)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata1/host0 (1363)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata1/host0/scsi_host/host0 (1364)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata1/host0/target0:0:0 (1365)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata1/host0/target0:0:0/0:0:0:0 (1366)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata1/host0/target0:0:0/0:0:0:0/block/sr0 (1367)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata1/host0/target0:0:0/0:0:0:0/bsg/0:0:0:0 (1368)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata1/host0/target0:0:0/0:0:0:0/scsi_device/0:0:0:0 (1369)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata1/host0/target0:0:0/0:0:0:0/scsi_generic/sg0 (1370)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata1/link1/ata_link/link1 (1371)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata1/link1/dev1.0/ata_device/dev1.0 (1372)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata2/ata_port/ata2 (1373)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata2/host1 (1374)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata2/host1/scsi_host/host1 (1375)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata2/link2/ata_link/link2 (1376)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata2/link2/dev2.0/ata_device/dev2.0 (1377)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata3/ata_port/ata3 (1378)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata3/host2 (1379)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata3/host2/scsi_host/host2 (1380)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata3/host2/target2:0:0 (1381)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata3/host2/target2:0:0/2:0:0:0 (1382)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata3/host2/target2:0:0/2:0:0:0/block/sr1 (1383)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata3/host2/target2:0:0/2:0:0:0/bsg/2:0:0:0 (1384)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata3/host2/target2:0:0/2:0:0:0/scsi_device/2:0:0:0 (1385)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata3/host2/target2:0:0/2:0:0:0/scsi_generic/sg1 (1386)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata3/link3/ata_link/link3 (1387)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata3/link3/dev3.0/ata_device/dev3.0 (1388)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata1/host0/target0:0:0/0:0:0:0/block/sr0 (1566)
2018-12-28 23:07:26 (97536): Guest Log:   /sys/devices/pci0000:00/0000:00:0d.0/ata3/host2/target2:0:0/2:0:0:0/block/sr1 (1567)
2018-12-28 23:12:12 (97536): Guest Log: Fri Dec 28 23:07:25 UTC 2018 dhcp -------------------------------
2018-12-28 23:12:12 (97536): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2018-12-28 23:12:12 (97536): Guest Log: 00:00:00.000129 main     Log opened 2018-12-28T23:07:25.374569000Z
2018-12-28 23:12:12 (97536): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2018-12-28 23:12:12 (97536): Guest Log: 00:00:00.000129 main     Log opened 2018-12-28T23:07:25.374569000Z
2018-12-28 23:12:12 (97536): Guest Log: 00:00:00.004652 main     OS Product: Linux
2018-12-28 23:12:12 (97536): Guest Log: 00:00:00.004711 main     OS Release: 4.1.19-boot2docker
2018-12-28 23:12:12 (97536): Guest Log: 00:00:00.004757 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2018-12-28 23:12:12 (97536): Guest Log: 00:00:00.004797 main     Executable: /sbin/VBoxService
2018-12-28 23:12:12 (97536): Guest Log: 00:00:00.004798 main     Process ID: 803
2018-12-28 23:12:12 (97536): Guest Log: 00:00:00.004799 main     Package type: LINUX_64BITS_GENERIC
2018-12-28 23:12:12 (97536): Guest Log: 00:00:00.004652 main     OS Product: Linux
2018-12-28 23:12:12 (97536): Guest Log: 00:00:00.004711 main     OS Release: 4.1.19-boot2docker
2018-12-28 23:12:12 (97536): Guest Log: 00:00:00.004757 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2018-12-28 23:12:12 (97536): Guest Log: 00:00:00.004797 m00:00:00.012002 main     5.0.16 r105871 started. Verbose level = 0
2018-12-28 23:12:12 (97536): Guest Log: ain     Executable: /sbin/VBoxService
2018-12-28 23:12:12 (97536): Guest Log: 00:00:00.004798 main     Process ID: 803
2018-12-28 23:12:12 (97536): Guest Log: 00:00:00.004799 main     Package type: LINUX_64BITS_GENERIC
2018-12-28 23:12:12 (97536): Guest Log: 00:00:00.012002 main     5.0.16 r105871 started. Verbose level = 0
2018-12-28 23:12:12 (97536): Guest Log: 00:00:00.022475 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2018-12-28 23:12:12 (97536): Guest Log: 00:00:00.022535 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2018-12-28 23:12:12 (97536): Guest Log: Mounting BOINC shared/...
2018-12-28 23:12:12 (97536): Guest Log: -------------------
2018-12-28 23:12:12 (97536): Guest Log: Fri Dec 28 23:07:25 UTC 2018
2018-12-28 23:12:12 (97536): Guest Log: 00:00:05.023063 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2018-12-28 23:12:12 (97536): Guest Log: Fri Dec 28 23:07:32 UTC 2018
2018-12-28 23:12:12 (97536): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2018-12-28 23:12:12 (97536): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2018-12-28 23:12:12 (97536): Guest Log:     inet 127.0.0.1/8 scope host lo
2018-12-28 23:12:12 (97536): Guest Log:        valid_lft forever preferred_lft forever
2018-12-28 23:12:12 (97536): Guest Log:     inet6 ::1/128 scope host 
2018-12-28 23:12:12 (97536): Guest Log:        valid_lft forever preferred_lft forever
2018-12-28 23:12:12 (97536): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2018-12-28 23:12:12 (97536): Guest Log:     link/ether de:5c:69:9d:99:db brd ff:ff:ff:ff:ff:ff
2018-12-28 23:12:12 (97536): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2018-12-28 23:12:12 (97536): Guest Log:     link/ether 08:00:27:16:47:7a brd ff:ff:ff:ff:ff:ff
2018-12-28 23:12:12 (97536): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2018-12-28 23:12:12 (97536): Guest Log:        valid_lft forever preferred_lft forever
2018-12-28 23:12:12 (97536): Guest Log:     inet6 fe80::a00:27ff:fe16:477a/64 scope link 
2018-12-28 23:12:12 (97536): Guest Log:        valid_lft forever preferred_lft forever
2018-12-28 23:12:12 (97536): Guest Log: -------------------
2018-12-28 23:12:12 (97536): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2018-12-28 23:12:12 (97536): Guest Log: Waiting for Docker daemon to start...
2018-12-28 23:12:12 (97536): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2018-12-28 23:12:12 (97536): Guest Log: Running boinc_app...
2018-12-28 23:12:12 (97536): Guest Log: Importing Docker image from BOINC...
2018-12-28 23:12:12 (97536): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-12-28 23:12:12 (97536): Guest Log: tmpfs                     2.6G    164.2M      2.5G   6% /
2018-12-28 23:12:12 (97536): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-12-28 23:12:12 (97536): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-12-28 23:12:12 (97536): Guest Log: shared                  165.3G    117.3G     48.1G  71% /root/shared
2018-12-28 23:12:12 (97536): Guest Log: tmpfs                     2.6G    164.2M      2.5G   6% /var/lib/docker/aufs
2018-12-28 23:12:12 (97536): Guest Log: 00:00:10.023923 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2018-12-28 23:12:12 (97536): Guest Log: doing docker load...
2018-12-28 23:12:12 (97536): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-12-28 23:12:12 (97536): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /
2018-12-28 23:12:12 (97536): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-12-28 23:12:12 (97536): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-12-28 23:12:12 (97536): Guest Log: shared                  165.3G    116.0G     49.3G  70% /root/shared
2018-12-28 23:12:12 (97536): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /var/lib/docker/aufs
2018-12-28 23:12:12 (97536): Guest Log:               total        used        free      shared  buff/cache   available
2018-12-28 23:12:12 (97536): Guest Log: Mem:           3007          60        2244         663         703        2245
2018-12-28 23:12:12 (97536): Guest Log: Swap:           700           0         700
2018-12-28 23:12:12 (97536): Guest Log: Building apps directory...
2018-12-28 23:15:12 (97536): Guest Log: Killed
2018-12-28 23:15:12 (97536): Guest Log: Prerun diagnostics...
2018-12-28 23:15:12 (97536): Guest Log: REPOSITORY                    TAG                 IMAGE ID            CREATED             SIZE
2018-12-28 23:15:12 (97536): Guest Log: nanohub_apps_share64_matlab   4                   32c863520615        12 months ago       488.2 MB
2018-12-28 23:15:12 (97536): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2018-12-28 23:15:12 (97536): Guest Log: 499.0M	/var/lib/docker
2018-12-28 23:15:12 (97536): Guest Log:               total        used        free      shared  buff/cache   available
2018-12-28 23:15:12 (97536): Guest Log: Mem:           3007          53        2239         663         713        2249
2018-12-28 23:15:12 (97536): Guest Log: Swap:           700           0         700
2018-12-28 23:15:12 (97536): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2018-12-28 23:15:12 (97536): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /
2018-12-28 23:15:12 (97536): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2018-12-28 23:15:12 (97536): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2018-12-28 23:15:12 (97536): Guest Log: shared                  165.3G    123.9G     41.4G  75% /root/shared
2018-12-28 23:15:12 (97536): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /var/lib/docker/aufs
2018-12-28 23:15:12 (97536): Guest Log: Running... 
2018-12-28 23:15:12 (97536): Guest Log: 07005416_221.boinc
2018-12-28 23:15:12 (97536): Guest Log: 07005416_221.sh
2018-12-28 23:16:15 (97536): Guest Log: boinc_app exited (0)
2018-12-28 23:16:15 (97536): Guest Log: Saving results...
2018-12-28 23:16:15 (97536): Guest Log: 07005416_221_output.tar.gz
2018-12-28 23:16:15 (97536): VM Completion File Detected.
2018-12-28 23:16:15 (97536): Powering off VM.
2018-12-28 23:16:16 (97536): Successfully stopped VM.
2018-12-28 23:16:16 (97536): Deregistering VM. (boinc_10ef5284d69cbfb8, slot#96)
2018-12-28 23:16:16 (97536): Removing network bandwidth throttle group from VM.
2018-12-28 23:16:16 (97536): Removing storage controller(s) from VM.
2018-12-28 23:16:16 (97536): Removing VM from VirtualBox.
2018-12-28 23:16:16 (97536): Removing virtual ISO 9660 disk from VirtualBox.
23:16:22 (97536): called boinc_finish(0)

</stderr_txt>
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