Task 63359

Name 06388866_018_1
Workunit 47384
Created 11 Dec 2017, 12:02:43 UTC
Sent 11 Dec 2017, 12:13:10 UTC
Report deadline 11 Dec 2017, 20:13:10 UTC
Received 11 Dec 2017, 13:38:21 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 216
Run time 7 min 35 sec
CPU time 2 min 54 sec
Validate state Valid
Credit 1.52
Device peak FLOPS 2.24 GFLOPS
Application version boinc2docker v1.11 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 93.50 MB
Peak swap size 3.37 GB
Peak disk usage 1.14 GB

Stderr output

<core_client_version>7.4.23</core_client_version>
<![CDATA[
<stderr_txt>
2017-12-11 08:30:01 (1763): vboxwrapper (7.7.26197): starting
2017-12-11 08:30:01 (1763): Feature: Checkpoint interval offset (180 seconds)
2017-12-11 08:30:01 (1763): Detected: VirtualBox VboxManage Interface (Version: 5.1.8)
2017-12-11 08:30:01 (1763): Detected: Minimum checkpoint interval (600.000000 seconds)
2017-12-11 08:30:02 (1763): Create VM. (boinc_c3c0ba890c4733e6, slot#2)
2017-12-11 08:30:02 (1763): Updating drive controller type and model for desired configuration.
2017-12-11 08:30:02 (1763): Setting Memory Size for VM. (3072MB)
2017-12-11 08:30:02 (1763): Setting CPU Count for VM. (1)
2017-12-11 08:30:02 (1763): Setting Chipset Options for VM.
2017-12-11 08:30:02 (1763): Setting Boot Options for VM.
2017-12-11 08:30:02 (1763): Setting Network Configuration for NAT.
2017-12-11 08:30:02 (1763): Enabling VM Network Access.
2017-12-11 08:30:02 (1763): Disabling USB Support for VM.
2017-12-11 08:30:03 (1763): Disabling COM Port Support for VM.
2017-12-11 08:30:03 (1763): Disabling LPT Port Support for VM.
2017-12-11 08:30:03 (1763): Disabling Audio Support for VM.
2017-12-11 08:30:03 (1763): Disabling Clipboard Support for VM.
2017-12-11 08:30:03 (1763): Disabling Drag and Drop Support for VM.
2017-12-11 08:30:03 (1763): Adding storage controller(s) to VM.
2017-12-11 08:30:03 (1763): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2017-12-11 08:30:03 (1763): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2017-12-11 08:30:03 (1763): Enabling shared directory for VM.
2017-12-11 08:30:03 (1763): Starting VM. (boinc_c3c0ba890c4733e6, slot#2)
2017-12-11 08:30:05 (1763): Successfully started VM. (PID = '2587')
2017-12-11 08:30:05 (1763): Reporting VM Process ID to BOINC.
2017-12-11 08:30:05 (1763): Guest Log: BIOS: VirtualBox 5.1.8
2017-12-11 08:30:05 (1763): VM state change detected. (old = 'poweroff', new = 'running')
2017-12-11 08:30:05 (1763): Preference change detected
2017-12-11 08:30:05 (1763): Setting CPU throttle for VM. (75%)
2017-12-11 08:30:05 (1763): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2017-12-11 08:30:07 (1763): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2017-12-11 08:30:07 (1763): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2017-12-11 08:30:07 (1763): Guest Log: BIOS: Boot from Hard Disk 0 failed
2017-12-11 08:30:07 (1763): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2017-12-11 08:30:07 (1763): Guest Log: BIOS: Booting from CD-ROM...
2017-12-11 08:30:10 (1763): Guest Log: BIOS: KBD: unsupported int 16h function 03
2017-12-11 08:30:10 (1763): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2017-12-11 08:30:31 (1763): Guest Log: net.ipv4.ip_forward = 1
2017-12-11 08:30:31 (1763): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2017-12-11 08:30:31 (1763): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2017-12-11 08:30:31 (1763): Guest Log: sysctl: "cannot stat %s" is an unknown key
2017-12-11 08:30:31 (1763): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2017-12-11 08:30:31 (1763): Guest Log: Segmentation fault
2017-12-11 08:30:31 (1763): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2017-12-11 08:30:31 (1763): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2017-12-11 08:30:32 (1763): Guest Log: automount ...
2017-12-11 08:30:32 (1763): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2017-12-11 08:30:32 (1763): Guest Log: automount over.
2017-12-11 08:30:33 (1763): Guest Log: Setting hostname to boot2docker Done.
2017-12-11 08:30:33 (1763): Guest Log: Mon Dec 11 08:30:30 UTC 2017 dhcp -------------------------------
2017-12-11 08:30:38 (1763): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2017-12-11 08:30:38 (1763): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1283)
2017-12-11 08:30:38 (1763): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6 (1296)
2017-12-11 08:30:38 (1763): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6/event5 (1297)
2017-12-11 08:30:38 (1763): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1298)
2017-12-11 08:30:38 (1763): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1299)
2017-12-11 08:30:38 (1763): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1300)
2017-12-11 08:30:38 (1763): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1301)
2017-12-11 08:30:38 (1763): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1302)
2017-12-11 08:30:38 (1763): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1303)
2017-12-11 08:30:38 (1763): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1304)
2017-12-11 08:30:38 (1763): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1305)
2017-12-11 08:30:38 (1763): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1306)
2017-12-11 08:30:38 (1763): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1308)
2017-12-11 08:30:39 (1763): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1309)
2017-12-11 08:30:39 (1763): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1310)
2017-12-11 08:30:39 (1763): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1311)
2017-12-11 08:30:39 (1763): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1312)
2017-12-11 08:30:39 (1763): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1313)
2017-12-11 08:30:39 (1763): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1314)
2017-12-11 08:30:39 (1763): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1315)
2017-12-11 08:30:39 (1763): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1316)
2017-12-11 08:30:39 (1763): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1319)
2017-12-11 08:30:40 (1763): Guest Log: Mon Dec 11 08:30:37 UTC 2017 dhcp -------------------------------
2017-12-11 08:30:40 (1763): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2017-12-11 08:30:40 (1763): Guest Log: 00:00:00.000666 main     Log opened 2017-12-11T08:30:38.323578000Z
2017-12-11 08:30:40 (1763): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2017-12-11 08:30:40 (1763): Guest Log: 00:00:00.004180 main     OS Product: Linux
2017-12-11 08:30:40 (1763): Guest Log: 00:00:00.004257 main     OS Release: 4.1.19-boot2docker
2017-12-11 08:30:40 (1763): Guest Log: 00:00:00.004312 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2017-12-11 08:30:40 (1763): Guest Log: 00:00:00.004366 main     Executable: /sbin/VBoxService
2017-12-11 08:30:40 (1763): Guest Log: 00:00:00.004368 main     Process ID: 738
2017-12-11 08:30:40 (1763): Guest Log: 00:00:00.004369 main     Package type: LINUX_64BITS_GENERIC
2017-12-11 08:30:40 (1763): Guest Log: 00:00:00.000666 main     Log opened 2017-12-11T08:30:38.323578000Z
2017-12-11 08:30:40 (1763): Guest Log: 00:00:00.004180 main     OS Product: Linux
2017-12-11 08:30:40 (1763): Guest Log: 00:00:00.004257 main     OS Release: 4.1.19-boot2docker
2017-12-11 08:30:40 (1763): Guest Log: 00:00:00.004312 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2017-12-11 08:30:40 (1763): Guest Log: 00:00:00.004366 main     Executable: /sbin/VBoxService
2017-12-11 08:30:40 (1763): Guest Log: 00:0000:00:00.015717 main     5.0.16 r105871 started. Verbose level = 0
2017-12-11 08:30:40 (1763): Guest Log: :00.004368 main     Process ID: 738
2017-12-11 08:30:40 (1763): Guest Log: 00:00:00.004369 main     Package type: LINUX_64BITS_GENERIC
2017-12-11 08:30:40 (1763): Guest Log: 00:00:00.015717 main     5.0.16 r105871 started. Verbose level = 0
2017-12-11 08:30:41 (1763): Guest Log: 00:00:00.075638 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2017-12-11 08:30:41 (1763): Guest Log: 00:00:00.075774 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2017-12-11 08:30:41 (1763): Guest Log: Mounting BOINC shared/...
2017-12-11 08:30:41 (1763): Guest Log: -------------------
2017-12-11 08:30:41 (1763): Guest Log: Mon Dec 11 13:30:40 UTC 2017
2017-12-11 08:30:46 (1763): Guest Log: 00:00:05.078016 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2017-12-11 08:30:46 (1763): Guest Log: Mon Dec 11 13:30:45 UTC 2017
2017-12-11 08:30:46 (1763): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2017-12-11 08:30:46 (1763): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2017-12-11 08:30:46 (1763): Guest Log:     inet 127.0.0.1/8 scope host lo
2017-12-11 08:30:46 (1763): Guest Log:        valid_lft forever preferred_lft forever
2017-12-11 08:30:46 (1763): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2017-12-11 08:30:46 (1763): Guest Log:     link/ether 82:32:f3:75:1f:11 brd ff:ff:ff:ff:ff:ff
2017-12-11 08:30:46 (1763): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2017-12-11 08:30:46 (1763): Guest Log:     link/ether 08:00:27:92:6c:7d brd ff:ff:ff:ff:ff:ff
2017-12-11 08:30:46 (1763): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2017-12-11 08:30:46 (1763): Guest Log:        valid_lft forever preferred_lft forever
2017-12-11 08:30:46 (1763): Guest Log: -------------------
2017-12-11 08:30:46 (1763): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2017-12-11 08:30:46 (1763): Guest Log: Waiting for Docker daemon to start...
2017-12-11 08:30:49 (1763): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2017-12-11 08:30:49 (1763): Guest Log: Running boinc_app...
2017-12-11 08:30:49 (1763): Guest Log: Importing Docker image from BOINC...
2017-12-11 08:30:49 (1763): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2017-12-11 08:30:49 (1763): Guest Log: tmpfs                     2.6G    164.1M      2.5G   6% /
2017-12-11 08:30:49 (1763): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2017-12-11 08:30:49 (1763): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2017-12-11 08:30:49 (1763): Guest Log: shared                  140.1G     29.9G    110.1G  21% /root/shared
2017-12-11 08:30:49 (1763): Guest Log: tmpfs                     2.6G    164.1M      2.5G   6% /var/lib/docker/aufs
2017-12-11 08:30:51 (1763): Guest Log: 00:00:10.083105 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2017-12-11 08:31:07 (1763): Guest Log: doing docker load...
2017-12-11 08:31:32 (1763): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2017-12-11 08:31:32 (1763): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /
2017-12-11 08:31:32 (1763): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2017-12-11 08:31:32 (1763): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2017-12-11 08:31:32 (1763): Guest Log: shared                  140.1G     29.5G    110.6G  21% /root/shared
2017-12-11 08:31:32 (1763): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /var/lib/docker/aufs
2017-12-11 08:31:32 (1763): Guest Log:               total        used        free      shared  buff/cache   available
2017-12-11 08:31:32 (1763): Guest Log: Mem:           3007          48        2256         663         701        2257
2017-12-11 08:31:32 (1763): Guest Log: Swap:           702           0         702
2017-12-11 08:31:32 (1763): Guest Log: Building apps directory...
2017-12-11 08:31:37 (1763): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2017-12-11 08:31:47 (1763): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077_links.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2017-12-11 08:31:48 (1763): Guest Log: mv /root/shared/appsSource/rappture /root/shared/apps/share64/debian7/environ.d
2017-12-11 08:37:14 (1763): Guest Log: Prerun diagnostics...
2017-12-11 08:37:14 (1763): Guest Log: REPOSITORY                    TAG                 IMAGE ID            CREATED             SIZE
2017-12-11 08:37:14 (1763): Guest Log: nanohub_apps_share64_matlab   4                   32c863520615        5 days ago          488.2 MB
2017-12-11 08:37:14 (1763): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2017-12-11 08:37:14 (1763): Guest Log: 499.0M	/var/lib/docker
2017-12-11 08:37:14 (1763): Guest Log:               total        used        free      shared  buff/cache   available
2017-12-11 08:37:14 (1763): Guest Log: Mem:           3007          51        2242         663         713        2252
2017-12-11 08:37:14 (1763): Guest Log: Swap:           702           0         702
2017-12-11 08:37:14 (1763): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2017-12-11 08:37:14 (1763): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /
2017-12-11 08:37:14 (1763): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2017-12-11 08:37:14 (1763): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2017-12-11 08:37:14 (1763): Guest Log: shared                  140.1G     33.5G    106.5G  24% /root/shared
2017-12-11 08:37:14 (1763): Guest Log: tmpfs                     2.6G    663.1M      2.0G  24% /var/lib/docker/aufs
2017-12-11 08:37:14 (1763): Guest Log: Running... 
2017-12-11 08:37:15 (1763): Guest Log: 06388866_018.boinc
2017-12-11 08:37:15 (1763): Guest Log: 06388866_018.sh
2017-12-11 08:37:58 (1763): Guest Log: boinc_app exited (0)
2017-12-11 08:37:58 (1763): Guest Log: Saving results...
2017-12-11 08:37:58 (1763): Guest Log: 06388866_018_output.tar.gz
2017-12-11 08:37:58 (1763): VM Completion File Detected.
2017-12-11 08:37:58 (1763): Powering off VM.
2017-12-11 08:38:00 (1763): Successfully stopped VM.
2017-12-11 08:38:00 (1763): Deregistering VM. (boinc_c3c0ba890c4733e6, slot#2)
2017-12-11 08:38:00 (1763): Removing network bandwidth throttle group from VM.
2017-12-11 08:38:00 (1763): Removing storage controller(s) from VM.
2017-12-11 08:38:00 (1763): Removing VM from VirtualBox.
2017-12-11 08:38:00 (1763): Removing virtual ISO 9660 disk from VirtualBox.
08:38:05 (1763): called boinc_finish(0)

</stderr_txt>
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