Task 64066

Name 06388868_453_2
Workunit 47319
Created 11 Dec 2017, 12:47:24 UTC
Sent 11 Dec 2017, 13:25:43 UTC
Report deadline 11 Dec 2017, 21:25:43 UTC
Received 11 Dec 2017, 13:34:35 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 215
Run time 4 min 34 sec
CPU time 2 min 47 sec
Validate state Valid
Credit 1.75
Device peak FLOPS 2.24 GFLOPS
Application version boinc2docker v1.11 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 93.59 MB
Peak swap size 3.54 GB
Peak disk usage 592.99 MB

Stderr output

<core_client_version>7.4.23</core_client_version>
<![CDATA[
<stderr_txt>
2017-12-11 08:26:56 (3783): vboxwrapper (7.7.26197): starting
2017-12-11 08:26:56 (3783): Feature: Checkpoint interval offset (137 seconds)
2017-12-11 08:26:56 (3783): Detected: VirtualBox VboxManage Interface (Version: 5.1.8)
2017-12-11 08:26:56 (3783): Detected: Minimum checkpoint interval (600.000000 seconds)
2017-12-11 08:26:57 (3783): Create VM. (boinc_cc02b8495744b515, slot#2)
2017-12-11 08:26:57 (3783): Updating drive controller type and model for desired configuration.
2017-12-11 08:27:17 (3783): Setting Memory Size for VM. (3072MB)
2017-12-11 08:27:17 (3783): Setting CPU Count for VM. (1)
2017-12-11 08:27:17 (3783): Setting Chipset Options for VM.
2017-12-11 08:27:17 (3783): Setting Boot Options for VM.
2017-12-11 08:27:18 (3783): Setting Network Configuration for NAT.
2017-12-11 08:27:18 (3783): Enabling VM Network Access.
2017-12-11 08:27:18 (3783): Disabling USB Support for VM.
2017-12-11 08:27:18 (3783): Disabling COM Port Support for VM.
2017-12-11 08:27:18 (3783): Disabling LPT Port Support for VM.
2017-12-11 08:27:18 (3783): Disabling Audio Support for VM.
2017-12-11 08:27:18 (3783): Disabling Clipboard Support for VM.
2017-12-11 08:27:19 (3783): Disabling Drag and Drop Support for VM.
2017-12-11 08:27:19 (3783): Adding storage controller(s) to VM.
2017-12-11 08:27:19 (3783): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2017-12-11 08:27:19 (3783): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2017-12-11 08:27:20 (3783): Enabling shared directory for VM.
2017-12-11 08:27:20 (3783): Starting VM. (boinc_cc02b8495744b515, slot#2)
2017-12-11 08:27:21 (3783): Successfully started VM. (PID = '4962')
2017-12-11 08:27:21 (3783): Reporting VM Process ID to BOINC.
2017-12-11 08:27:22 (3783): Guest Log: BIOS: VirtualBox 5.1.8
2017-12-11 08:27:22 (3783): VM state change detected. (old = 'poweroff', new = 'running')
2017-12-11 08:27:22 (3783): Preference change detected
2017-12-11 08:27:22 (3783): Setting CPU throttle for VM. (75%)
2017-12-11 08:27:24 (3783): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2017-12-11 08:27:24 (3783): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2017-12-11 08:27:24 (3783): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2017-12-11 08:27:24 (3783): Guest Log: BIOS: Boot from Hard Disk 0 failed
2017-12-11 08:27:24 (3783): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2017-12-11 08:27:24 (3783): Guest Log: BIOS: Booting from CD-ROM...
2017-12-11 08:27:27 (3783): Guest Log: BIOS: KBD: unsupported int 16h function 03
2017-12-11 08:27:27 (3783): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2017-12-11 08:27:47 (3783): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2017-12-11 08:27:47 (3783): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2017-12-11 08:27:50 (3783): Guest Log: net.ipv4.ip_forward = 1
2017-12-11 08:27:50 (3783): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2017-12-11 08:27:50 (3783): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2017-12-11 08:27:50 (3783): Guest Log: sysctl: "cannot stat %s" is an unknown key
2017-12-11 08:27:50 (3783): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2017-12-11 08:27:50 (3783): Guest Log: Segmentation fault
2017-12-11 08:27:51 (3783): Guest Log: automount ...
2017-12-11 08:27:53 (3783): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2017-12-11 08:27:53 (3783): Guest Log: automount over.
2017-12-11 08:27:53 (3783): Guest Log: Setting hostname to boot2docker Done.
2017-12-11 08:27:53 (3783): Guest Log: Mon Dec 11 08:27:51 UTC 2017 dhcp -------------------------------
2017-12-11 08:27:59 (3783): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2017-12-11 08:27:59 (3783): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1316)
2017-12-11 08:28:00 (3783): Guest Log: Mon Dec 11 08:27:57 UTC 2017 dhcp -------------------------------
2017-12-11 08:28:00 (3783): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2017-12-11 08:28:00 (3783): Guest Log: 00:00:00.000695 main     Log opened 2017-12-11T08:27:58.511031000Z
2017-12-11 08:28:00 (3783): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2017-12-11 08:28:00 (3783): Guest Log: 00:00:00.000695 main     Log opened 2017-12-11T08:27:58.511031000Z
2017-12-11 08:28:00 (3783): Guest Log: 00:00:00.035708 main     OS Product: Linux
2017-12-11 08:28:00 (3783): Guest Log: 00:00:00.035778 main     OS Release: 4.1.19-boot2docker
2017-12-11 08:28:00 (3783): Guest Log: 00:00:00.035833 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2017-12-11 08:28:00 (3783): Guest Log: 00:00:00.035886 main     Executable: /sbin/VBoxService
2017-12-11 08:28:00 (3783): Guest Log: 00:00:00.035888 main     Process ID: 746
2017-12-11 08:28:00 (3783): Guest Log: 00:00:00.035889 main     Package type: LINUX_64BITS_GENERIC
2017-12-11 08:28:00 (3783): Guest Log: 00:00:00:00.037931 main     5.0.16 r105871 started. Verbose level = 0
2017-12-11 08:28:00 (3783): Guest Log: 00:00.035708 main     OS Product: Linux
2017-12-11 08:28:00 (3783): Guest Log: 00:00:00.035778 main     OS Release: 4.1.19-boot2docker
2017-12-11 08:28:00 (3783): Guest Log: 00:00:00.035833 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2017-12-11 08:28:00 (3783): Guest Log: 00:00:00.035886 main     Executable: /sbin/VBoxService
2017-12-11 08:28:00 (3783): Guest Log: 00:00:00.072402 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2017-12-11 08:28:00 (3783): Guest Log: 00:00:00.072563 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2017-12-11 08:28:00 (3783): Guest Log: 00:00:00.035888 main     Process ID: 746
2017-12-11 08:28:00 (3783): Guest Log: 00:00:00.035889 main     Package type: LINUX_64BITS_GENERIC
2017-12-11 08:28:00 (3783): Guest Log: 00:00:00.037931 main     5.0.16 r105871 started. Verbose level = 0
2017-12-11 08:28:01 (3783): Guest Log: Mounting BOINC shared/...
2017-12-11 08:28:01 (3783): Guest Log: -------------------
2017-12-11 08:28:01 (3783): Guest Log: Mon Dec 11 13:28:01 UTC 2017
2017-12-11 08:28:05 (3783): Guest Log: 00:00:05.082735 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2017-12-11 08:28:06 (3783): Guest Log: Mon Dec 11 13:28:06 UTC 2017
2017-12-11 08:28:06 (3783): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2017-12-11 08:28:06 (3783): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2017-12-11 08:28:06 (3783): Guest Log:     inet 127.0.0.1/8 scope host lo
2017-12-11 08:28:06 (3783): Guest Log:        valid_lft forever preferred_lft forever
2017-12-11 08:28:06 (3783): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 
2017-12-11 08:28:06 (3783): Guest Log:     link/ether 5a:f1:53:75:72:5e brd ff:ff:ff:ff:ff:ff
2017-12-11 08:28:06 (3783): Guest Log:     link/ether 08:00:27:6c:fb:f0 brd ff:ff:ff:ff:ff:ff
2017-12-11 08:28:06 (3783): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0
2017-12-11 08:28:06 (3783): Guest Log:        valid_lft forever preferred_lft forever
2017-12-11 08:28:06 (3783): Guest Log: -------------------
2017-12-11 08:28:06 (3783): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2017-12-11 08:28:06 (3783): Guest Log: Waiting for Docker daemon to start...
2017-12-11 08:28:09 (3783): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2017-12-11 08:28:09 (3783): Guest Log: Running boinc_app...
2017-12-11 08:28:09 (3783): Guest Log: Importing Docker image from BOINC...
2017-12-11 08:28:09 (3783): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2017-12-11 08:28:09 (3783): Guest Log: tmpfs                     2.6G    164.1M      2.5G   6% /
2017-12-11 08:28:09 (3783): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2017-12-11 08:28:09 (3783): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2017-12-11 08:28:09 (3783): Guest Log: shared                  886.1G     84.6G    801.4G  10% /root/shared
2017-12-11 08:28:09 (3783): Guest Log: tmpfs                     2.6G    164.1M      2.5G   6% /var/lib/docker/aufs
2017-12-11 08:28:10 (3783): Guest Log: 00:00:10.084820 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2017-12-11 08:28:29 (3783): Guest Log: doing docker load...
2017-12-11 08:28:54 (3783): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2017-12-11 08:28:54 (3783): Guest Log: tmpfs                     2.6G    721.5M      1.9G  27% /
2017-12-11 08:28:54 (3783): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2017-12-11 08:28:54 (3783): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2017-12-11 08:28:54 (3783): Guest Log: shared                  886.1G     82.5G    803.5G   9% /root/shared
2017-12-11 08:28:54 (3783): Guest Log: tmpfs                     2.6G    721.5M      1.9G  27% /var/lib/docker/aufs
2017-12-11 08:28:54 (3783): Guest Log:               total        used        free      shared  buff/cache   available
2017-12-11 08:28:54 (3783): Guest Log: Mem:           3007          49        2195         721         761        2196
2017-12-11 08:28:54 (3783): Guest Log: Swap:           703           0         703
2017-12-11 08:28:54 (3783): Guest Log: Building apps directory...
2017-12-11 08:28:58 (3783): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2017-12-11 08:29:07 (3783): Guest Log: tar xf /root/shared/appsSource/rappture_grid_tag_1.7.2-6645-2077_links.tar --directory /root/shared/apps/share64/debian7/rappture/grid
2017-12-11 08:29:07 (3783): Guest Log: mv /root/shared/appsSource/rappture /root/shared/apps/share64/debian7/environ.d
2017-12-11 08:31:14 (3783): Guest Log: Prerun diagnostics...
2017-12-11 08:31:15 (3783): Guest Log: REPOSITORY                    TAG                 IMAGE ID            CREATED             SIZE
2017-12-11 08:31:15 (3783): Guest Log: nanohub_apps_share64_octave   5                   a3c939485731        5 days ago          547 MB
2017-12-11 08:31:15 (3783): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2017-12-11 08:31:15 (3783): Guest Log: 557.4M	/var/lib/docker
2017-12-11 08:31:15 (3783): Guest Log:               total        used        free      shared  buff/cache   available
2017-12-11 08:31:15 (3783): Guest Log: Mem:           3007          52        2189         721         765        2193
2017-12-11 08:31:15 (3783): Guest Log: Swap:           703           0         703
2017-12-11 08:31:15 (3783): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2017-12-11 08:31:15 (3783): Guest Log: tmpfs                     2.6G    721.5M      1.9G  27% /
2017-12-11 08:31:15 (3783): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2017-12-11 08:31:15 (3783): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2017-12-11 08:31:15 (3783): Guest Log: shared                  886.1G     81.8G    804.2G   9% /root/shared
2017-12-11 08:31:15 (3783): Guest Log: tmpfs                     2.6G    721.5M      1.9G  27% /var/lib/docker/aufs
2017-12-11 08:31:15 (3783): Guest Log: Running... 
2017-12-11 08:31:16 (3783): Guest Log: 06388868_453.boinc
2017-12-11 08:31:16 (3783): Guest Log: 06388868_453.sh
2017-12-11 08:31:44 (3783): Guest Log: boinc_app exited (0)
2017-12-11 08:31:44 (3783): Guest Log: Saving results...
2017-12-11 08:31:44 (3783): Guest Log: 06388868_453_output.tar.gz
2017-12-11 08:31:44 (3783): VM Completion File Detected.
2017-12-11 08:31:44 (3783): Powering off VM.
2017-12-11 08:31:44 (3783): Successfully stopped VM.
2017-12-11 08:31:44 (3783): Deregistering VM. (boinc_cc02b8495744b515, slot#2)
2017-12-11 08:31:44 (3783): Removing network bandwidth throttle group from VM.
2017-12-11 08:31:44 (3783): Removing storage controller(s) from VM.
2017-12-11 08:31:44 (3783): Removing VM from VirtualBox.
2017-12-11 08:31:44 (3783): Removing virtual ISO 9660 disk from VirtualBox.
08:31:49 (3783): called boinc_finish(0)

</stderr_txt>
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