Task 7568679

Name 07550387_05_4
Workunit 5907196
Created 14 Nov 2019, 15:57:01 UTC
Sent 14 Nov 2019, 15:57:07 UTC
Report deadline 19 Nov 2019, 15:57:07 UTC
Received 14 Nov 2019, 21:21:46 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 2580
Run time 3 hours 46 min 24 sec
CPU time 3 hours 27 min 34 sec
Validate state Valid
Credit 19.26
Device peak FLOPS 2.60 GFLOPS
Application version boinc2docker v1.12 (vbox64_mt)
x86_64-pc-linux-gnu
Peak working set size 1.82 GB
Peak swap size 3.45 GB
Peak disk usage 227.38 MB

Stderr output

<core_client_version>7.9.3</core_client_version>
<![CDATA[
<stderr_txt>
2019-11-14 16:34:44 (26228): vboxwrapper (7.7.26197): starting
2019-11-14 16:34:44 (26228): Feature: Checkpoint interval offset (37 seconds)
2019-11-14 16:34:44 (26228): Detected: VirtualBox VboxManage Interface (Version: 5.2.32)
2019-11-14 16:34:44 (26228): Detected: Minimum checkpoint interval (600.000000 seconds)
2019-11-14 16:34:44 (26228): Create VM. (boinc_bdd7d54c548f5793, slot#1)
2019-11-14 16:34:44 (26228): Updating drive controller type and model for desired configuration.
2019-11-14 16:34:45 (26228): Setting Memory Size for VM. (3072MB)
2019-11-14 16:34:45 (26228): Setting CPU Count for VM. (1)
2019-11-14 16:34:45 (26228): Setting Chipset Options for VM.
2019-11-14 16:34:45 (26228): Setting Boot Options for VM.
2019-11-14 16:34:45 (26228): Setting Network Configuration for NAT.
2019-11-14 16:34:45 (26228): Enabling VM Network Access.
2019-11-14 16:34:45 (26228): Disabling USB Support for VM.
2019-11-14 16:34:46 (26228): Disabling COM Port Support for VM.
2019-11-14 16:34:46 (26228): Disabling LPT Port Support for VM.
2019-11-14 16:34:46 (26228): Disabling Audio Support for VM.
2019-11-14 16:34:46 (26228): Disabling Clipboard Support for VM.
2019-11-14 16:34:46 (26228): Disabling Drag and Drop Support for VM.
2019-11-14 16:34:46 (26228): Adding storage controller(s) to VM.
2019-11-14 16:34:46 (26228): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2019-11-14 16:34:46 (26228): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-11-14 16:34:47 (26228): Enabling shared directory for VM.
2019-11-14 16:34:47 (26228): Starting VM. (boinc_bdd7d54c548f5793, slot#1)
2019-11-14 16:34:48 (26228): Successfully started VM. (PID = '26564')
2019-11-14 16:34:48 (26228): Reporting VM Process ID to BOINC.
2019-11-14 16:34:48 (26228): Guest Log: BIOS: VirtualBox 5.2.32
2019-11-14 16:34:48 (26228): Guest Log: CPUID EDX: 0x078bfbff
2019-11-14 16:34:48 (26228): VM state change detected. (old = 'poweroff', new = 'running')
2019-11-14 16:34:49 (26228): Preference change detected
2019-11-14 16:34:49 (26228): Setting CPU throttle for VM. (100%)
2019-11-14 16:34:49 (26228): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2019-11-14 16:34:52 (26228): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-11-14 16:34:52 (26228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80
2019-11-14 16:34:52 (26228): Guest Log: BIOS: Boot from Hard Disk 0 failed
2019-11-14 16:34:52 (26228): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003
2019-11-14 16:34:52 (26228): Guest Log: BIOS: Booting from CD-ROM...
2019-11-14 16:34:58 (26228): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-11-14 16:34:58 (26228): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-11-14 16:35:14 (26228): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-11-14 16:35:14 (26228): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-11-14 16:35:14 (26228): Guest Log: net.ipv4.ip_forward = 1
2019-11-14 16:35:14 (26228): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory
2019-11-14 16:35:14 (26228): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-11-14 16:35:14 (26228): Guest Log: sysctl: "cannot stat %s" is an unknown key
2019-11-14 16:35:14 (26228): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory
2019-11-14 16:35:14 (26228): Guest Log: Segmentation fault
2019-11-14 16:35:14 (26228): Guest Log: automount ...
2019-11-14 16:35:14 (26228): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string
2019-11-14 16:35:15 (26228): Guest Log: automount over.
2019-11-14 16:35:15 (26228): Guest Log: Setting hostname to boot2docker Done.
2019-11-14 16:35:15 (26228): Guest Log: Thu Nov 14 16:35:13 UTC 2019 dhcp -------------------------------
2019-11-14 16:35:21 (26228): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:
2019-11-14 16:35:21 (26228): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1316)
2019-11-14 16:35:23 (26228): Guest Log: Thu Nov 14 16:35:19 UTC 2019 dhcp -------------------------------
2019-11-14 16:35:23 (26228): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-11-14 16:35:23 (26228): Guest Log: 00:00:00.000631 main     Log opened 2019-11-14T16:35:20.189381000Z
2019-11-14 16:35:23 (26228): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log
2019-11-14 16:35:23 (26228): Guest Log: 00:00:00.000631 main     Log opened 2019-11-14T16:35:20.189381000Z
2019-11-14 16:35:23 (26228): Guest Log: 00:00:00.035454 main     OS Product: Linux
2019-11-14 16:35:23 (26228): Guest Log: 00:00:00.036139 main     OS Release: 4.1.19-boot2docker
2019-11-14 16:35:23 (26228): Guest Log: 00:00:00.036509 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-11-14 16:35:23 (26228): Guest Log: 00:00:00.036786 main     Executable: /sbin/VBoxService
2019-11-14 16:35:23 (26228): Guest Log: 00:00:00.036830 main     Process ID: 731
2019-11-14 16:35:23 (26228): Guest Log: 00:00:00.036865 main     Package type: LINUX_64BITS_GENERIC
2019-11-14 16:35:23 (26228): Guest Log: 00:00:00.035454 main     OS Product: Linux
2019-11-14 16:35:23 (26228): Guest Log: 00:00:00.036139 main     OS Release: 4.1.19-boot2docker
2019-11-14 16:35:23 (26228): Guest Log: 00:00:00.036509 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016
2019-11-14 16:35:23 (26228): Guest Log: 00:00:00.036786 main     Executable: /sbin/VBoxService
2019-11-14 16:35:23 (26228): Guest Log: 00:00:00.036830 main     Process ID: 731
2019-11-14 16:35:23 (26228): Guest Log: 00:00:00.036865 main     Package type: LINUX_64BITS_GENERIC
2019-11-14 16:35:23 (26228): Guest Log: 00:00:00.123897 main     5.0.16 r105871 started. Verbose level = 0
2019-11-14 16:35:23 (26228): Guest Log: 00:00:00.123897 main     5.0.16 r105871 started. Verbose level = 0
2019-11-14 16:35:23 (26228): Guest Log: 00:00:00.193511 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory
2019-11-14 16:35:23 (26228): Guest Log: 00:00:00.193712 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed
2019-11-14 16:35:23 (26228): Guest Log: Mounting BOINC shared/...
2019-11-14 16:35:23 (26228): Guest Log: -------------------
2019-11-14 16:35:23 (26228): Guest Log: Thu Nov 14 16:35:20 UTC 2019
2019-11-14 16:35:27 (26228): Guest Log: 00:00:05.226222 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed
2019-11-14 16:35:28 (26228): Guest Log: Thu Nov 14 16:35:28 UTC 2019
2019-11-14 16:35:28 (26228): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 
2019-11-14 16:35:28 (26228): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00
2019-11-14 16:35:28 (26228): Guest Log:     inet 127.0.0.1/8 scope host lo
2019-11-14 16:35:28 (26228): Guest Log:        valid_lft forever preferred_lft forever
2019-11-14 16:35:28 (26228): Guest Log:     inet6 ::1/128 scope host 
2019-11-14 16:35:28 (26228): Guest Log:     link/ether ea:8f:8d:b1:cc:a1 brd ff:ff:ff:ff:ff:ff
2019-11-14 16:35:28 (26228): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000
2019-11-14 16:35:28 (26228): Guest Log:     link/ether 08:00:27:42:a3:2e brd ff:ff:ff:ff:ff:ff
2019-11-14 16:35:28 (26228): Guest Log: -------------------
2019-11-14 16:35:28 (26228): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence
2019-11-14 16:35:28 (26228): Guest Log: Waiting for Docker daemon to start...
2019-11-14 16:35:30 (26228): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-11-14 16:35:30 (26228): Guest Log: Running boinc_app...
2019-11-14 16:35:30 (26228): Guest Log: Importing Docker image from BOINC...
2019-11-14 16:35:30 (26228): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-11-14 16:35:30 (26228): Guest Log: tmpfs                     2.6G    164.2M      2.5G   6% /
2019-11-14 16:35:30 (26228): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-11-14 16:35:30 (26228): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2019-11-14 16:35:30 (26228): Guest Log: shared                  228.2G     24.3G    203.9G  11% /root/shared
2019-11-14 16:35:30 (26228): Guest Log: tmpfs                     2.6G    164.2M      2.5G   6% /var/lib/docker/aufs
2019-11-14 16:35:32 (26228): Guest Log: 00:00:10.228537 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed
2019-11-14 16:35:47 (26228): Guest Log: doing docker load...
2019-11-14 16:36:25 (26228): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-11-14 16:36:25 (26228): Guest Log: tmpfs                     2.6G    631.9M      2.0G  23% /
2019-11-14 16:36:25 (26228): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-11-14 16:36:25 (26228): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2019-11-14 16:36:25 (26228): Guest Log: shared                  228.2G     24.2G    204.0G  11% /root/shared
2019-11-14 16:36:25 (26228): Guest Log: tmpfs                     2.6G    631.9M      2.0G  23% /var/lib/docker/aufs
2019-11-14 16:36:25 (26228): Guest Log:               total        used        free      shared  buff/cache   available
2019-11-14 16:36:25 (26228): Guest Log: Mem:           3007          50        2288         631         668        2288
2019-11-14 16:36:25 (26228): Guest Log: Swap:           703           0         703
2019-11-14 16:36:25 (26228): Guest Log: Building apps directory...
2019-11-14 16:36:44 (26228): Guest Log: Prerun diagnostics...
2019-11-14 16:36:44 (26228): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE
2019-11-14 16:36:44 (26228): Guest Log: nanohub_apps_base   11                  42db2bf7db3d        23 months ago       458.1 MB
2019-11-14 16:36:44 (26228): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES
2019-11-14 16:36:44 (26228): Guest Log: 467.8M	/var/lib/docker
2019-11-14 16:36:44 (26228): Guest Log:               total        used        free      shared  buff/cache   available
2019-11-14 16:36:44 (26228): Guest Log: Mem:           3007          52        2284         631         670        2285
2019-11-14 16:36:44 (26228): Guest Log: Swap:           703           0         703
2019-11-14 16:36:44 (26228): Guest Log: Filesystem                Size      Used Available Use% Mounted on
2019-11-14 16:36:44 (26228): Guest Log: tmpfs                     2.6G    631.9M      2.0G  23% /
2019-11-14 16:36:44 (26228): Guest Log: tmpfs                     1.5G         0      1.5G   0% /dev/shm
2019-11-14 16:36:44 (26228): Guest Log: cgroup                    1.5G         0      1.5G   0% /sys/fs/cgroup
2019-11-14 16:36:44 (26228): Guest Log: shared                  228.2G     24.3G    204.0G  11% /root/shared
2019-11-14 16:36:44 (26228): Guest Log: tmpfs                     2.6G    631.9M      2.0G  23% /var/lib/docker/aufs
2019-11-14 16:36:44 (26228): Guest Log: Running... 
2019-11-14 16:36:45 (26228): Guest Log: 07550387_05.boinc
2019-11-14 16:36:45 (26228): Guest Log: 07550387_05.sh
2019-11-14 18:14:43 (26228): Status Report: Elapsed Time: '6000.512233'
2019-11-14 18:14:43 (26228): Status Report: CPU Time: '5479.410000'
2019-11-14 19:54:37 (26228): Status Report: Elapsed Time: '12002.036050'
2019-11-14 19:54:37 (26228): Status Report: CPU Time: '11006.070000'
2019-11-14 20:20:59 (26228): Guest Log: boinc_app exited (0)
2019-11-14 20:20:59 (26228): Guest Log: Saving results...
2019-11-14 20:20:59 (26228): Guest Log: 07550387_05_output.tar.gz
2019-11-14 20:20:59 (26228): VM Completion File Detected.
2019-11-14 20:20:59 (26228): Powering off VM.
2019-11-14 20:21:00 (26228): Successfully stopped VM.
2019-11-14 20:21:00 (26228): Deregistering VM. (boinc_bdd7d54c548f5793, slot#1)
2019-11-14 20:21:00 (26228): Removing network bandwidth throttle group from VM.
2019-11-14 20:21:00 (26228): Removing storage controller(s) from VM.
2019-11-14 20:21:00 (26228): Removing VM from VirtualBox.
2019-11-14 20:21:00 (26228): Removing virtual ISO 9660 disk from VirtualBox.
20:21:05 (26228): called boinc_finish(0)

</stderr_txt>
]]>


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